SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5290

Length: 2151 nt

UniGene Fasta

>sp_v3.0_unigene5290
GGTCACAAGCTTGAGCGCCACTGACCCGAGTCAAAATTACTAGTGAAGTGGCGATTATTCTGCCGACTGCAAATTTTGTTGTGAATTTGTGGGGGCGATATCTGGTATTTTATTGATCTTCCCATCACTAACAATGGTTGGAGACCAAGTTTGTAAGATGAAGTCCGAAGAAATGGAAGAAACGGAAATTGCATTGGACGGGTCGGTTGATTTGAAAGGGAGGCCTGTTTCAAGAGAAAAAACTGGAGGGCTGAAAGCCTGTTCATTCATCGTTGGTTACGAGTTCTGCGAACGATTGGCATTTGGCGGAATTTGGGCTAATTTAGTGATTTATCTCACAACCAAGCTGCACGAGGGCACGGTTTCTGCTTCCAGGAATGTCACCAATTGGACCGGTACGATGTGGATAATGCCCATATTAGGAGCTTACATTGCCGATAGTCACTGGGGTCGCTACTGGACCTTCATAGTCTTCTCAGCTGTCTATGTAGTGGGAATGGCGCTTCTAACTTTGGCGGTCTCTCTGCCATCTCTGAGACCCCACGCCTGCACTCCCAACGAAGGCTGTGACAGTGCGTCGAATCTTCAGGCTGCTATTTTCTATTCTGGCTTATATCTTCTGGCGGTTGGTGCTGGAGGAACAAAGTCCAACATCTCCACTTTCGGGGCCGACCAGTTTGATGATTTCAATCCCAAGGAAAAGAGCCAGAAAAACTCATTTTTCAATTGGTGGATGTTCACCATATTTCTGGGGACTCTTTTTGGTAAAACATTTCTGATATACATCGAAGACAGGATCAGTTGGGGTGTCAGCTATGGGATCATCACAGCAGCGCTCGTCCTATCATTCATTCTTTTTTTGTTTGGAACTCCCCTTTACAGACATAAGATGCGAGCTGGTAGCCCTCTTCAGCGAATGGGAAGGGTAGTTGTCAGAGTAGTTCACAACTGGAAGCTCCAAGCTTCTTCAGATCGATCTCAGTTATTCGAAGTCGATGCCGCTGAATACGCTAGTAAAGGAAGATATCCCATTGCTCACACTCAGACTCGGGTTCTAAGATGCCTAGACAAGGCAGCCATTAAAACTGCAGAAGACGCAACCAACAGCAAGGTCAGCACTGTGACTGAAGTGGAGGAAACGAAGCTTATGATACGACTTCTTCCCGTCTGGTTGGCGACCATCATACCTAGCACGATGGAAACGCTGGTAGGCACGCTGTTTGTAAAACAGGCTGCGACACTGGACAGGCATTTGGGTAATTCCAGGAGCTTCGAAATCCCAGCAGCGAGCACTTCGGCCTTCCTCACGCTATCAATGCTAATAACAACGGTGGTCTATGACCGAATATTGGTCCCCGTCTTCCGAAGATTTACAGGGAATCCCAAAGGTATAACATCTCTGCAAAGGTTGGGAGCAGGCATGGTGATCCAGATTATTGTGATGGGCATAGCGATTGCCGCAGAAGTTAAACGATTAGATGTGATTAGAGATCACGGGATCCAAAATAACAGCAAAGCAATTGTGCCCCGCAGCATATACACGCTGATTCCACAGTTTGCACTGATGGGCACAGCGGATGCATTGCTAGATATCGGGAAAATAGAGTTCTTTTACGATCAAGCACCAGAAAGTATGCAGAGCCTTGGAACTTCACTATACACAAGCTCTCTAGGTGTGGGTTCCTTCGTGGGTAGTTTTCTGTTGACGATTGTGAGTAATATCACTGGACGAAGGGGCCATCAGGCGTGGATTCTTAATAATCTGAATGCATCGCGACTGGATTATTACTATGCATTCTTAGCTGTTCTGAATGTGTTGAACTTCATTTTTTTCTCATTCGTCTCTTATTGCTACAGATATAAGAGGGAAACAACTGAGGCTTTCGGGAAGGAAGCAGAGAAGGCAATAGAGACTGTAACTCTCAGCTGAGAGGAGGATGGGGAAGTATTTGGGATTTGCGTTGGCAATTTTCATTGTTTAATAGATATCCTTTCAACTATTTCAGAATATGACTTTTGAATTGTTTAGGAGATCCACTATCTTCGTTCATGATAAAATTTAATTGGGTATCTTTATTTTGAGAACAGAATGTATATTTATTAGTTAAAGATTTATTTTTGATATATTCAATAAGAAAAGTTAAATAAGCC

Ace file of the UniGene sp_v3.0_unigene5290

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	peptide transporter PTR3-B [Arabidopsis thaliana] sp\|Q9FNL8.1\|PTR3B_ARATH RecName: Full=Peptide transporter PTR3-B dbj\|BAB08249.1\| peptide transporter [Arabidopsis thaliana] gb\|AED95331.1\| peptide transporter PTR3-B [Arabidopsis thaliana]	-	-	0.0	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%
Sma3	Oligopeptide transporter, putative	-	-	8.415e-16	-

Source	Gene names
Sma3	At1g62200; At1g68570; At2g02040; At2g40460; At3g54140; At5g01180; At5g46040; At5g46050; B1026C12.10; B1377B10.10; F14H20.11; F19K23.13; F24B22.100; F24J5.19; F5K20_260; F7J8_160; GSVIVT00001823001; GSVIVT00001842001; GSVIVT00009628001; GSVIVT00016880001;

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	high affinity oligopeptide transporter activity	GO:0015334	Molecular Function	-
Sma3	dipeptide transporter activity	GO:0042936	Molecular Function	-
Sma3	tripeptide transporter activity	GO:0042937	Molecular Function	-
Sma3	oligopeptide transport	GO:0006857	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	hyperosmotic salinity response	GO:0042538	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-
Sma3	dipeptide transport	GO:0042938	Biological Process	-
Sma3	tripeptide transport	GO:0042939	Biological Process	-
Sma3	response to leucine	GO:0043201	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Oligopeptide transporter	IPR000109	-	0.0	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G46040.1	Major facilitator superfamily protein chr5:18671397-18673551 REVERSE LENGTH=586	52%
RefSeq	Arabidopsis thaliana	NP_199416.1	peptide transporter PTR3-B [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002314492.1	predicted protein [Populus trichocarpa]	56%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVR2

Fln msg:

Fln protein: MVGDQVCKMKSEEMEETEIALDGSVDLKGRPVSREKTGGLKACSFIVGYEFCERLAFGGIWANLVIYLTTKLHEGTVSASRNVTNWTGTMWIMPILGAYIADSHWGRYWTFIVFSAVYVVGMALLTLAVSLPSLRPHACTPNEGCDSASNLQAAIFYSGLYLLAVGAGGTKSNISTFGADQFDDFNPKEKSQKNSFFNWWMFTIFLGTLFGKTFLIYIEDRISWGVSYGIITAALVLSFILFLFGTPLYRHKMRAGSPLQRMGRVVVRVVHNWKLQASSDRSQLFEVDAAEYASKGRYPIAHTQTRVLRCLDKAAIKTAEDATNSKVSTVTEVEETKLMIRLLPVWLATIIPSTMETLVGTLFVKQAATLDRHLGNSRSFEIPAASTSAFLTLSMLITTVVYDRILVPVFRRFTGNPKGITSLQRLGAGMVIQIIVMGIAIAAEVKRLDVIRDHGIQNNSKAIVPRSIYTLIPQFALMGTADALLDIGKIEFFYDQAPESMQSLGTSLYTSSLGVGSFVGSFLLTIVSNITGRRGHQAWILNNLNASRLDYYYAFLAVLNVLNFIFFSFVSYCYRYKRETTEAFGKEAEKAIETVTLS*

Protein Length: 600

Fln nts: GGTCACAAGCTTGAGCGCCACTGACCCGAGTCAAAATTACTAGTGAAGTGGCGATTATTCTGCCGACTGCAAATTTTGTTGTGAATTTGTGGGGGCGATATCTGGTATTTTATTGATCTTCCCATCACTAACA_-_ATGGTTGGAGACCAAGTTTGTAAGATGAAGTCCGAAGAAATGGAAGAAACGGAAATTGCATTGGACGGGTCGGTTGATTTGAAAGGGAGGCCTGTTTCAAGAGAAAAAACTGGAGGGCTGAAAGCCTGTTCATTCATCGTTGGTTACGAGTTCTGCGAACGATTGGCATTTGGCGGAATTTGGGCTAATTTAGTGATTTATCTCACAACCAAGCTGCACGAGGGCACGGTTTCTGCTTCCAGGAATGTCACCAATTGGACCGGTACGATGTGGATAATGCCCATATTAGGAGCTTACATTGCCGATAGTCACTGGGGTCGCTACTGGACCTTCATAGTCTTCTCAGCTGTCTATGTAGTGGGAATGGCGCTTCTAACTTTGGCGGTCTCTCTGCCATCTCTGAGACCCCACGCCTGCACTCCCAACGAAGGCTGTGACAGTGCGTCGAATCTTCAGGCTGCTATTTTCTATTCTGGCTTATATCTTCTGGCGGTTGGTGCTGGAGGAACAAAGTCCAACATCTCCACTTTCGGGGCCGACCAGTTTGATGATTTCAATCCCAAGGAAAAGAGCCAGAAAAACTCATTTTTCAATTGGTGGATGTTCACCATATTTCTGGGGACTCTTTTTGGTAAAACATTTCTGATATACATCGAAGACAGGATCAGTTGGGGTGTCAGCTATGGGATCATCACAGCAGCGCTCGTCCTATCATTCATTCTTTTTTTGTTTGGAACTCCCCTTTACAGACATAAGATGCGAGCTGGTAGCCCTCTTCAGCGAATGGGAAGGGTAGTTGTCAGAGTAGTTCACAACTGGAAGCTCCAAGCTTCTTCAGATCGATCTCAGTTATTCGAAGTCGATGCCGCTGAATACGCTAGTAAAGGAAGATATCCCATTGCTCACACTCAGACTCGGGTTCTAAGATGCCTAGACAAGGCAGCCATTAAAACTGCAGAAGACGCAACCAACAGCAAGGTCAGCACTGTGACTGAAGTGGAGGAAACGAAGCTTATGATACGACTTCTTCCCGTCTGGTTGGCGACCATCATACCTAGCACGATGGAAACGCTGGTAGGCACGCTGTTTGTAAAACAGGCTGCGACACTGGACAGGCATTTGGGTAATTCCAGGAGCTTCGAAATCCCAGCAGCGAGCACTTCGGCCTTCCTCACGCTATCAATGCTAATAACAACGGTGGTCTATGACCGAATATTGGTCCCCGTCTTCCGAAGATTTACAGGGAATCCCAAAGGTATAACATCTCTGCAAAGGTTGGGAGCAGGCATGGTGATCCAGATTATTGTGATGGGCATAGCGATTGCCGCAGAAGTTAAACGATTAGATGTGATTAGAGATCACGGGATCCAAAATAACAGCAAAGCAATTGTGCCCCGCAGCATATACACGCTGATTCCACAGTTTGCACTGATGGGCACAGCGGATGCATTGCTAGATATCGGGAAAATAGAGTTCTTTTACGATCAAGCACCAGAAAGTATGCAGAGCCTTGGAACTTCACTATACACAAGCTCTCTAGGTGTGGGTTCCTTCGTGGGTAGTTTTCTGTTGACGATTGTGAGTAATATCACTGGACGAAGGGGCCATCAGGCGTGGATTCTTAATAATCTGAATGCATCGCGACTGGATTATTACTATGCATTCTTAGCTGTTCTGAATGTGTTGAACTTCATTTTTTTCTCATTCGTCTCTTATTGCTACAGATATAAGAGGGAAACAACTGAGGCTTTCGGGAAGGAAGCAGAGAAGGCAATAGAGACTGTAACTCTCAGCTGA___GAGGAGGATGGGGAAGTATTTGGGATTTGCGTTGGCAATTTTCATTGTTTAATAGATATCCTTTCAACTATTTCAGAATATGACTTTTGAATTGTTTAGGAGATCCACTATCTTCGTTCATGATAAAATTTAATTGGGTATCTTTATTTTGAGAACAGAATGTATATTTATTAGTTAAAGATTTATTTTTGATATATTCAATAAGAAAAGTTAAATAAGCC

Fln Alignment:

Contig5290___VCKMKSEEMEETEIALDGSVDLKGRPVSREKTGGLKACSFIVGYEFCERLAFGGIWANLVIYLTTKLHEGTVSASRNVTNWTGTMWIMPILGAYIADSHWGRYWTFIVFSAVYVVGMALLTLAVSLPSLRPHACTPNEGCDSASNLQAAIFYSGLYLLAVGAGGTKSNISTFGADQFDDFNPKEKSQKNSFFNWWMFTIFLGTLFGKTFLIYIEDRISWGVSYGIITAALVLSFILFLFGTPLYRHKMRAGSPLQRMGRVVVRVVHNWKLQASSDRSQLFEVDAAEYASKGRYPIAHTQTRVLRCLDKAAIKTAEDATNS------KVSTVTEVEETKLMIRLLPVWLATIIPSTMETLVGTLFVKQAATLDRHLGNSRSFEIPAASTSAFLTLSMLITTVVYDRILVPVFRRFTGNPKGITSLQRLGAGMVIQIIVMGIAIAAEVKRLDVIRDHGIQNNSKAIVPRSIYTLIPQFALMGTADALLDIGKIEFFYDQAPESMQXXXXXXXXXXXXXXXXXXXXXXTIVSNITGRRGHQAWILNNLNASRLDYYYAFLAVLNVLNFIFFSFVSYCYRYKR
A9NVR2______________ISSVQTGKASEDEYTGDGSVDFWGRPSVKENTGNWRACPFILGNECCERLAYYGINTNLVTYLTKRLHQGNAAAAKSVTTWAGTCYLTPLFGAVLADAYWGRYWTIAAFSTIYFIGMATLTLSASVSSLKPPSCIGSD-CPTANLAQYGVFFLGLYLIALGTGGIKPCVSSFGADQFDDTDPKEKKKKGSFFNWFYFSINVGALVSSSVLVWVQDNVGWGWGFGIPTLFMGLAIGSFFSGTPLYRLQKPGGSPVTRMCQVVVASLRKLRKTVPLDHSHLYEVQDRNSAIQGSRKLEHTDE--FKCLDKSAIITDDDVRKGGFSNPWRLCTVTQVEEMKILLRMFPIWATGIVFAAVYSQISTMFVEQGMTLDTSIGS--RFHIPPASLSVFDVVSVMIWVPVYDRVIVPIVSKYTKRERGFTELQRMGIGLFISILAMVAAALVEIRRLNIVKTYDLVYDKGTPVPMSIFWQIPQYFLVGASEVFTFVGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSLIVTIVMFATTKGGNIGWIPDNLNEGHLDYYFWVLASLSVLNLLVYVSCAHRYKYKK

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
284			20	80	0.995493
332		16		83	0.994512
444	85		14		0.993533
946		12		87	0.992554
971		18		81	0.999994
1309		83		16	0.994512
1582	16		83		0.994512
1587	66		33		1.0
1589		16		83	0.994512
1606	83		16		0.994512
1800	80		20		0.999996
1860		88		11	0.923564
1954		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain