SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5103

Length: 2010 nt

UniGene Fasta

>sp_v3.0_unigene5103
GGATGGTCACAAACCTCATCACACAGGAGAGAAAGTCCTCTTTGTGCTTTGGGTGTGTTTTGCAATAGGTTTCTCGTCTCTCGTTGGCACCCGCTGCTGCACCTACATAGCCAATCCAATCCAATCGGAGCAGAAAAAATCAGAGCAGAAAGCGGAGCAAGAGGAAGAAGTGAAGGTGCCCATATACCTTCTGATCAACTTTGAATACCGAGCTCTGATCCGTGCAGACAGATCCGCAGTCCCCATATTCTCCGCACCTAAATTCATTTTGTAAGGGCTTATCATCCACCAAGTGCCAAAAATGTCGAAAAAAGGGTTAATGGAGCAGGACCTGAACAAGCTGGATGTTACCAAGTTGCACCCTCTCTCTCCAGAGGTCATTTCTCGTCAGGCTACAATAAACATAGGTACTATTGGGCATGTGGCACATGGGAAATCAACAGTTGTTAAAGCAATATCTGGTGTCCAGACAGTTCGTTTCAAGAATGAACTAGAGAGAAACATCACTATTAAGCTGGGATATGCTAACGCAAAAATATATAAATGTGAAGATGATCGCTGCCCTCGACCGATGGCCTACAAGGCATATGGAAGTGGGAAGGAAGATAGTCCTTTGTGTGATGTCGCTGGATTTGAAACCACTCGTATGAAGCTTTTAAGACATGTGTCTTTTGTTGATTGTCCGGGTCATGATATTCTCATGGCTACTATGCTCAATGGTGCGGCTATCATGGATGGGGCACTGCTTTTGATTGCTGGAAATGAGAGCTGTCCTCAACCTCAAACTTCAGAGCATCTTGCAGCGGTGGAGATCATGCGTCTTAAGCATATAATTATTTTACAAAACAAAATTGACCTTATCCAGGAGAGTGTAGCCATGAACCAGCATGAGGCAATTCAGAAGTTTATTCAGGGTACCATTGCGGATGGAGCACCTGTTGTACCGATCTCTGCACAACTGAAATACAACATTGATGTTGTCTGTGAATACATAGTAAACAAGATTCCCATTCCAGAGCGGAATTTTGTTGATCCACCCAATATGATCGTAATCAGATCTTTTGATGTGAATAAGCCTGGTGCTGAAGTGGATGAAATAAAAGGAGGTGTCGCTGGTGGAAGTATACTGAAGGGTGTGTTGAAAGTGAATCAAAAAATTGAAGTTCGCCCTGGCATTGTTGTCAAAGATGAAAGTGGTAGCATCAAGTGTACACCTATCTTTTCAAGAATAATTTCACTTTATGCTGAGCAAAATGAGTTGCAGTTTGCTGTTCCTGGAGGCCTTATTGGTGTGGGTACAACAATAGACCCCACACTGACACGTGCTGACAGGCTTGTGGGGCAAGTCCTTGGAGAAGTTGGAGCGCTACCCGATGTATTTGTTGAGCTTGAGGTTAACTTTTTCCTCCTCCGCCGACTTCTCGGAGTTAGGACAAAAGGAACAGAGAAACAGGGGAAAGTTTCAAAGCTGGCCAAGGGAGAGGTCTTGATGCTTAATATTGGTTCAATGTCCACTGGAGCTCGGGTGCTTGCTGTCAAAAATGATCTTGCAAAGCTCCAGCTGACTTCTCCAGTCTGTACGAGTAAAGGGGAAAAGATGGCACTTAGTAGGCGAGTAGAAAAGCATTGGCGATTGATAGGATGGGGTCAAATTCAAGCTGGGGCAATACTGGAAATTCCCCAGGGGTCCATATAAGATAGTAAATAAACAAAGCAAGTTATATTTGAGAAAAGAAAAAGGGTACTTCAGTAAAAGGAAGAATGTGGATAGGGAGAGAATTACTAGGAACAATTTTTGTTAGATGGAGAAGAAAACCTATCAAGCTAAAGTGTTCTAAAGGGAACAGCTAGCTCATATATTTATTCTGATCTTGATTTTTTTATTCAGTATTTAGCATTTGTTTTAGAATGAGCTCAGTTACAGAACCCGTATTTCCAGGTTACTGAATTTCACTACAGCTATTGCTTATGTTGTAATAGAGTCCAGACCCATTGAAGAATGACCATTGT

Ace file of the UniGene sp_v3.0_unigene5103

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	translation initiation factor eIF-2 gamma subunit [Arabidopsis thaliana] gb\|AAK29674.1\|AF353097_1 protein synthesis initiation factor eIF2 gamma [Arabidopsis thaliana] gb\|AAC16745.1\| Strong similarity to initiation factor eIF-2, gb\|U37354 from S. pombe. E	-	-	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	GTP binding	GO:0005525	Molecular Function	0.0	-
Sma3	GTPase activity	GO:0003924	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Translation initiation factor 2, gamma subunit, C-terminal	IPR015256	-	-
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G04170.1	EIF2 GAMMA eukaryotic translation initiation factor 2 gamma subunit chr1:1097423-1099702 FORWARD LENGTH=465	88%
RefSeq	Arabidopsis thaliana	NP_171913.1	translation initiation factor eIF-2 gamma subunit [Arabidopsis thaliana]	88%
RefSeq	Populus trichocarpa	XP_002326595.1	predicted protein [Populus trichocarpa]	88%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUT2

Fln msg:

Fln protein: MSKKGLMEQDLNKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMAYKAYGSGKEDSPLCDVAGFETTRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAGNESCPQPQTSEHLAAVEIMRLKHIIILQNKIDLIQESVAMNQHEAIQKFIQGTIADGAPVVPISAQLKYNIDVVCEYIVNKIPIPERNFVDPPNMIVIRSFDVNKPGAEVDEIKGGVAGGSILKGVLKVNQKIEVRPGIVVKDESGSIKCTPIFSRIISLYAEQNELQFAVPGGLIGVGTTIDPTLTRADRLVGQVLGEVGALPDVFVELEVNFFLLRRLLGVRTKGTEKQGKVSKLAKGEVLMLNIGSMSTGARVLAVKNDLAKLQLTSPVCTSKGEKMALSRRVEKHWRLIGWGQIQAGAILEIPQGSI*

Protein Length: 466

Fln nts: GGATGGTCACAAACCTCATCACACAGGAGAGAAAGTCCTCTTTGTGCTTTGGGTGTGTTTTGCAATAGGTTTCTCGTCTCTCGTTGGCACCCGCTGCTGCACCTACATAGCCAATCCAATCCAATCGGAGCAGAAAAAATCAGAGCAGAAAGCGGAGCAAGAGGAAGAAGTGAAGGTGCCCATATACCTTCTGATCAACTTTGAATACCGAGCTCTGATCCGTGCAGACAGATCCGCAGTCCCCATATTCTCCGCACCTAAATTCATTTTGTAAGGGCTTATCATCCACCAAGTGCCAAAA_-_ATGTCGAAAAAAGGGTTAATGGAGCAGGACCTGAACAAGCTGGATGTTACCAAGTTGCACCCTCTCTCTCCAGAGGTCATTTCTCGTCAGGCTACAATAAACATAGGTACTATTGGGCATGTGGCACATGGGAAATCAACAGTTGTTAAAGCAATATCTGGTGTCCAGACAGTTCGTTTCAAGAATGAACTAGAGAGAAACATCACTATTAAGCTGGGATATGCTAACGCAAAAATATATAAATGTGAAGATGATCGCTGCCCTCGACCGATGGCCTACAAGGCATATGGAAGTGGGAAGGAAGATAGTCCTTTGTGTGATGTCGCTGGATTTGAAACCACTCGTATGAAGCTTTTAAGACATGTGTCTTTTGTTGATTGTCCGGGTCATGATATTCTCATGGCTACTATGCTCAATGGTGCGGCTATCATGGATGGGGCACTGCTTTTGATTGCTGGAAATGAGAGCTGTCCTCAACCTCAAACTTCAGAGCATCTTGCAGCGGTGGAGATCATGCGTCTTAAGCATATAATTATTTTACAAAACAAAATTGACCTTATCCAGGAGAGTGTAGCCATGAACCAGCATGAGGCAATTCAGAAGTTTATTCAGGGTACCATTGCGGATGGAGCACCTGTTGTACCGATCTCTGCACAACTGAAATACAACATTGATGTTGTCTGTGAATACATAGTAAACAAGATTCCCATTCCAGAGCGGAATTTTGTTGATCCACCCAATATGATCGTAATCAGATCTTTTGATGTGAATAAGCCTGGTGCTGAAGTGGATGAAATAAAAGGAGGTGTCGCTGGTGGAAGTATACTGAAGGGTGTGTTGAAAGTGAATCAAAAAATTGAAGTTCGCCCTGGCATTGTTGTCAAAGATGAAAGTGGTAGCATCAAGTGTACACCTATCTTTTCAAGAATAATTTCACTTTATGCTGAGCAAAATGAGTTGCAGTTTGCTGTTCCTGGAGGCCTTATTGGTGTGGGTACAACAATAGACCCCACACTGACACGTGCTGACAGGCTTGTGGGGCAAGTCCTTGGAGAAGTTGGAGCGCTACCCGATGTATTTGTTGAGCTTGAGGTTAACTTTTTCCTCCTCCGCCGACTTCTCGGAGTTAGGACAAAAGGAACAGAGAAACAGGGGAAAGTTTCAAAGCTGGCCAAGGGAGAGGTCTTGATGCTTAATATTGGTTCAATGTCCACTGGAGCTCGGGTGCTTGCTGTCAAAAATGATCTTGCAAAGCTCCAGCTGACTTCTCCAGTCTGTACGAGTAAAGGGGAAAAGATGGCACTTAGTAGGCGAGTAGAAAAGCATTGGCGATTGATAGGATGGGGTCAAATTCAAGCTGGGGCAATACTGGAAATTCCCCAGGGGTCCATATAA___GATAGTAAATAAACAAAGCAAGTTATATTTGAGAAAAGAAAAAGGGTACTTCAGTAAAAGGAAGAATGTGGATAGGGAGAGAATTACTAGGAACAATTTTTGTTAGATGGAGAAGAAAACCTATCAAGCTAAAGTGTTCTAAAGGGAACAGCTAGCTCATATATTTATTCTGATCTTGATTTTTTTATTCAGTATTTAGCATTTGTTTTAGAATGAGCTCAGTTACAGAACCCGTATTTCCAGGTTACTGAATTTCACTACAGCTATTGCTTATGTTGTAATAGAGTCCAGACCCATTGAAGAATGACCATTGT

Fln Alignment:

Contig5103___MSKKGLMEQDLNKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMAYKAYGSGKEDSPLCDVAGFETTRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAGNESCPQPQTSEHLAAVEIMRLKHIIILQNKIDLIQESVAMNQHEAIQKFIQGTIADGAPVVPISAQLKYNIDVVCEYIVNKIPIPERNFVDPPNMIVIRSFDVNKPGAEVDEIKGGVAGGSILKGVLKVNQKIEVRPGIVVKDESGSIKCTPIFSRIISLYAEQNELQFAVPGGLIGVGTTIDPTLTRADRLVGQVLGEVGALPDVFVELEVNFFLLRRLLGVRTKGTEKQGKVSKLAKGEVLMLNIGSMSTGARVLAVKNDLAKLQLTSPVCTSKGEKMALSRRVEKHWRLIGWGQIQAGAILEIPQGSI
A9NUT2______________MSKKGLMEQDLNKLDVTKLNPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMSYKAYGSGKEDSPLCDVTGFDNTRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAGNESCPQPQTSEHLAAVEIMRLKHIIILQNKIDLIQESVAINQHEAIQKFIQGTIADGAPVVPISAQLKYNIDVVCEYIVNKIPIPERNFVDPPNMIVIRSFDVNKPGAEVDEIKGGVAGGSILKGVLKVNQKIEVRPGIVVKDENGNIKCTPIFSRIISLYAEQNELQFAVPGGLIGVGTTIDPTLTRADRLVGQVLGEVGELPDIFVELEVNFFLLRRLLGVRTKGTEKQGKVSKLAKGEVLMLNIGSMSTGARVLAVKNDLAKLQLTSPVCTSKGEKMALSRRVEKHWRLIGWGQIQAGAMLEIPQGSI

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
36	75			25	0.996473
57		12		87	0.992554
73		10		90	0.90298
132	63		36		1.0
301	83	16			0.994512
884		33	66		0.997452
926		33		66	0.997452
944	33			66	0.997452
950	33		66		0.997452
953	33	66			0.997452
977		33		66	0.997452
989		33		66	0.997452
999	33		66		0.997452
1000		33		66	0.997452
1073	33		66		0.997452
1094			66	33	0.997452
1202		33		66	0.997452
1204	33		66		0.997452
1220		33		66	0.997452
1259		33		66	0.997452
1754			44	55	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
111	126	CCAAT CCAAT CCAAT C	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain