SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4974

Length: 2436 nt

UniGene Fasta

>sp_v3.0_unigene4974
TATCCTTCTTGATCATATGGAGTTGTCTTTCTTGTTTTTAAATCTTTGGATCTCAGTTTCTCAGAAGTTAGTAATCCTTGACTCATAGCACATTAGAAATCCGCAACAATTCACAGCAGAAAGGACTCAATGTGCCAGATGCAAATCTAATACCCGTTGCATCTACATCTGCTGTGATGGAGCTAATGAACCTTGGACACAAGAACCGTGTTGTGGGAGCAACTGCTCTGAATGATCGGAGCAGCCGTTCGCACAGTGTTTTGACAGTGCATGTTCAGGGCAGAGATCTTACTTCTGGAACAATTCTTCGAGGGTGTCTTCATCTTGTTGACCTTGCTGGAAGTGAGAGAGTTGACAAATCCGAGGCCACCGGAGATAGGTTAAAGGAGGCACAGCATATTAACAGATCACTTTCAGCTTTAGGAGACGTGATTGCTGCTCTTGCACAAAAGAGCTCCCATGTTCCTTACCGAAATAGCAAGCTCACACAACTGCTTCAGGATTCTTTAGGTGGACAGGCAAAAACTCTCATGTTTGTGCACATAAGTCCTGAATTAGATGCACATGGGGAGACAATCAGCACTCTAAAATTTGCAGAGAGGGTTGCAACTGTTGAACTTGGTGCTGCACGTTCCAACAAGGAAAGTGGTGAGGTTAGGGAGCTGAAAGAACAGATTGCTAGTTTGAAGAATGCACTGGCAAAGAAGGAAGCAGAAGTTGAGCAGCGAATGAAGATTGGCGTCTCACCAATAACTAGGGATTCGAGGAACAGTCCTGAAAGACAGAGAATGAGGACTGGTTTCTCACCAATGCATCTACAAATGCAGAACATGGGAGATGTTCAATCACAGGTCAACCACAGACAACCTATGGAAGATGTTGTCAACAACATAGATGTGCGGAACAATATCACTGGAAGACAAAAGAGACCACCAACTCACGCTCAAGACTTTCTAGCGGAGTCAATTGATGCAAGTCCTCTTGTGTTTGGCAATGGTTTAGGTGAAATGAAGAAAGCAGTGCGCCGACCATCTCCAGATAGAAGATTGACATTGGACCATTGTAGTCAAACAAAGAACAAAATTAAGCATGATATCTTTGAAGAGCAAGATAGGAGAAATTGGCAGGACAAGGTGATGATGAACAAATATTTACCCATCCAGGGTCCATCTTTGCAAGATGATGTAATGGGATCGTGGGAAGGCCATGAACTGGAAAAACTAGACAATCCTTCTGAAATTTATAACCAAATGTACCATGCCAATCAAAGAAAGATTCATCCAGATTGCGAAGAAGAGAAATTATTACGGCAGCAGCTTCATGAGATGCAGGGGGTAATTAAAAGCAGACCTGTTAGAAAAGACAAACGTGAACATGATGGGCAGAGAACTCCTTATGAAGCTGCAACTACTGATGAGTCAGAGGTTGAAATTGATGCAAGAAGCAAGGATGACTATCTGACAAGTGATTCATCAGAAGCAGATCTTTTGTGGCAATTCAAGGCTCCAAATGTGGCTGCTGTGACCCCAGTTGAACATGTCTCACTGATCAAGAAGCCACCGCAGAGGATGTCGAAGACTCCTGAGCGAAGAAGTCCAAGCCAAGCTCAAGGCCCTCTTGGAGCTGCTAAGCTTGAACGTAAGCCATCGAATAAGTTTGATCGTAAGTTGCCTTCTGGTGGAATGGAAGGGAAGCGATCTTCATCTGGGGGAAAATTGAAGAACGATTCCAGAGTAATTCCGAGTAAGTAGCCACCTCCAGTAAATTTTAATCAAGTAATTCTTAAGGAAATGTAAGAGCATGAACCCATAACATCAACTGCACCCTCTTCAACTGAAATGGAAACAAGCTTGGAAGTTGCTCATGCTGCACAATTTATTTTGATTTCCATTCTTCCCCAGTTACATCTGAAGGATCAGCTGTCGAGTATTTTACAAAGAAGACTTTGCCCTGTCAGACAGTTATATCTCCGATTGGAGTTTCATACAGGTCATCCAAAAGATGGCAATAATAGTGCTATTGGTGCTGTTTCTTTCTCAATGATTTATACTTACAATTCTTTTAGCTTCACGGCTATCTTCCTCTCTTCTGATGATATCTCTTGATTGGATTGCAGAGTGTTGTAGAATATGATAGATAGGTAGAAGAGAGCAATAATTTGGTTGCTTCTCCATGTCTGCTAATGTTGTATGGCTTTCAGAATAGAGTTGTGATGGCCATGCTCTTACATGAAATTCACATGCTATTAGACATGGCCTTCTGTATTTGTTTTGCAATGTACCTATTGTAGATTTATCAAAATGTAATTGAAATATTCTTTGAGTTCTAGCACAAACCTTTTATGCTCTGTTTCTATATGTGCATTTTAAATCATATGCCGTTTGTGCCTAAAGAATCCTTCTTCAGCAACACGGAACATTTATTTCTCCGACTCTT

Ace file of the UniGene sp_v3.0_unigene4974

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	kinesin-related protein [Gossypium hirsutum]	-	-	0.0	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	33%
Sma3	Kinesin-like protein	-	-	5.996e-20	-

Source	Gene names
Sma3	AT4g05190; ATK1; ATK2; ATK3; ATK4; At1g63640; At1g72250; At1g73860; At2g47500; At3g10310; At3g44050; At4g05190; At4g21270; At4g27180; At5g27000; At5g54670; At5g65930; B1066G12.23; B1317D11.110; B21F5.3; CHLREDRAFT_102475; CHLREDRAFT_105722; CHLREDRAFT_119

Source	GOs	Term	Type	Identity
Sma3	nuclear chromosome, telomeric region	GO:0000784	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nuclear pore	GO:0005643	Cellular Component	-
Sma3	minus-end kinesin complex	GO:0005872	Cellular Component	-
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	microtubule associated complex	GO:0005875	Cellular Component	-
Sma3	spindle microtubule	GO:0005876	Cellular Component	-
Sma3	phragmoplast	GO:0009524	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	microtubule motor activity	GO:0003777	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	microtubule binding	GO:0008017	Molecular Function	-
Sma3	minus-end-directed microtubule motor activity	GO:0008569	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	telomere maintenance	GO:0000723	Biological Process	-
Sma3	cytokinesis	GO:0000910	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	protein import into nucleus	GO:0006606	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-
Sma3	mitosis	GO:0007067	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	anastral spindle assembly involved in male meiosis	GO:0009971	Biological Process	-
Sma3	spindle assembly	GO:0051225	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	FERM domain	IPR000299	-	-
Sma3	MyTH4 domain	IPR000857	-	-
Sma3	Bet v I domain	IPR000916	-	-
Sma3	Calponin homology domain	IPR001715	-	-
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	Kinesin-related conserved domain	IPR010544	-	-
Sma3	Telomere end binding protein	IPR011564	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Tetratricopeptide, MLP1/MLP2-like	IPR012929	-	-
Sma3	FERM/acyl-CoA-binding protein, 3-helical bundle	IPR014352	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-
Sma3	FERM central domain	IPR019748	-	-
Sma3	Band 4.1 domain	IPR019749	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G44730.1	ATKP1, KP1 kinesin-like protein 1 chr3:16285888-16290852 FORWARD LENGTH=1087	50%
RefSeq	Arabidopsis thaliana	NP_190059.3	kinesin-like protein 1 [Arabidopsis thaliana]	50%
RefSeq	Populus trichocarpa	XP_002330598.1	predicted protein [Populus trichocarpa]	46%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACB2

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is longer than subject: 583 - 509

Fln protein: SFLIIWSCLSCF*IFGSQFLRS**SLTHSTLEIRNNSQQKGLNVPDANLIPVASTSAVMELMNLGHKNRVVGATALNDRSSRSHSVLTVHVQGRDLTSGTILRGCLHLVDLAGSERVDKSEATGDRLKEAQHINRSLSALGDVIAALAQKSSHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPELDAHGETISTLKFAERVATVELGAARSNKESGEVRELKEQIASLKNALAKKEAEVEQRMKIGVSPITRDSRNSPERQRMRTGFSPMHLQMQNMGDVQSQVNHRQPMEDVVNNIDVRNNITGRQKRPPTHAQDFLAESIDASPLVFGNGLGEMKKAVRRPSPDRRLTLDHCSQTKNKIKHDIFEEQDRRNWQDKVMMNKYLPIQGPSLQDDVMGSWEGHELEKLDNPSEIYNQMYHANQRKIHPDCEEEKLLRQQLHEMQGVIKSRPVRKDKREHDGQRTPYEAATTDESEVEIDARSKDDYLTSDSSEADLLWQFKAPNVAAVTPVEHVSLIKKPPQRMSKTPERRSPSQAQGPLGAAKLERKPSNKFDRKLPSGGMEGKRSSSGGKLKNDSRVIPSK*

Protein Length: 584

Fln nts: TATCCTTCTTGATCATATGGAGTTGTCTTTCTTGTTTTTAAATCTTTGGATCTCAGTTTCTCAGAAGTTAGTAATCCTTGACTCATAGCACATTAGAAATCCGCAACAATTCACAGCAGAAAGGACTCAATGTGCCAGATGCAAATCTAATACCCGTTGCATCTACATCTGCTGTGATGGAGCTAATGAACCTTGGACACAAGAACCGTGTTGTGGGAGCAACTGCTCTGAATGATCGGAGCAGCCGTTCGCACAGTGTTTTGACAGTGCATGTTCAGGGCAGAGATCTTACTTCTGGAACAATTCTTCGAGGGTGTCTTCATCTTGTTGACCTTGCTGGAAGTGAGAGAGTTGACAAATCCGAGGCCACCGGAGATAGGTTAAAGGAGGCACAGCATATTAACAGATCACTTTCAGCTTTAGGAGACGTGATTGCTGCTCTTGCACAAAAGAGCTCCCATGTTCCTTACCGAAATAGCAAGCTCACACAACTGCTTCAGGATTCTTTAGGTGGACAGGCAAAAACTCTCATGTTTGTGCACATAAGTCCTGAATTAGATGCACATGGGGAGACAATCAGCACTCTAAAATTTGCAGAGAGGGTTGCAACTGTTGAACTTGGTGCTGCACGTTCCAACAAGGAAAGTGGTGAGGTTAGGGAGCTGAAAGAACAGATTGCTAGTTTGAAGAATGCACTGGCAAAGAAGGAAGCAGAAGTTGAGCAGCGAATGAAGATTGGCGTCTCACCAATAACTAGGGATTCGAGGAACAGTCCTGAAAGACAGAGAATGAGGACTGGTTTCTCACCAATGCATCTACAAATGCAGAACATGGGAGATGTTCAATCACAGGTCAACCACAGACAACCTATGGAAGATGTTGTCAACAACATAGATGTGCGGAACAATATCACTGGAAGACAAAAGAGACCACCAACTCACGCTCAAGACTTTCTAGCGGAGTCAATTGATGCAAGTCCTCTTGTGTTTGGCAATGGTTTAGGTGAAATGAAGAAAGCAGTGCGCCGACCATCTCCAGATAGAAGATTGACATTGGACCATTGTAGTCAAACAAAGAACAAAATTAAGCATGATATCTTTGAAGAGCAAGATAGGAGAAATTGGCAGGACAAGGTGATGATGAACAAATATTTACCCATCCAGGGTCCATCTTTGCAAGATGATGTAATGGGATCGTGGGAAGGCCATGAACTGGAAAAACTAGACAATCCTTCTGAAATTTATAACCAAATGTACCATGCCAATCAAAGAAAGATTCATCCAGATTGCGAAGAAGAGAAATTATTACGGCAGCAGCTTCATGAGATGCAGGGGGTAATTAAAAGCAGACCTGTTAGAAAAGACAAACGTGAACATGATGGGCAGAGAACTCCTTATGAAGCTGCAACTACTGATGAGTCAGAGGTTGAAATTGATGCAAGAAGCAAGGATGACTATCTGACAAGTGATTCATCAGAAGCAGATCTTTTGTGGCAATTCAAGGCTCCAAATGTGGCTGCTGTGACCCCAGTTGAACATGTCTCACTGATCAAGAAGCCACCGCAGAGGATGTCGAAGACTCCTGAGCGAAGAAGTCCAAGCCAAGCTCAAGGCCCTCTTGGAGCTGCTAAGCTTGAACGTAAGCCATCGAATAAGTTTGATCGTAAGTTGCCTTCTGGTGGAATGGAAGGGAAGCGATCTTCATCTGGGGGAAAATTGAAGAACGATTCCAGAGTAATTCCGAGTAAGTAG___CCACCTCCAGTAAATTTTAATCAAGTAATTCTTAAGGAAATGTAAGAGCATGAACCCATAACATCAACTGCACCCTCTTCAACTGAAATGGAAACAAGCTTGGAAGTTGCTCATGCTGCACAATTTATTTTGATTTCCATTCTTCCCCAGTTACATCTGAAGGATCAGCTGTCGAGTATTTTACAAAGAAGACTTTGCCCTGTCAGACAGTTATATCTCCGATTGGAGTTTCATACAGGTCATCCAAAAGATGGCAATAATAGTGCTATTGGTGCTGTTTCTTTCTCAATGATTTATACTTACAATTCTTTTAGCTTCACGGCTATCTTCCTCTCTTCTGATGATATCTCTTGATTGGATTGCAGAGTGTTGTAGAATATGATAGATAGGTAGAAGAGAGCAATAATTTGGTTGCTTCTCCATGTCTGCTAATGTTGTATGGCTTTCAGAATAGAGTTGTGATGGCCATGCTCTTACATGAAATTCACATGCTATTAGACATGGCCTTCTGTATTTGTTTTGCAATGTACCTATTGTAGATTTATCAAAATGTAATTGAAATATTCTTTGAGTTCTAGCACAAACCTTTTATGCTCTGTTTCTATATGTGCATTTTAAATCATATGCCGTTTGTGCCTAAAGAATCCTTCTTCAGCAACACGGAACATTTATTTCTCCGACTCTT

Fln Alignment:

Contig4974___VASTSAVMELMNLGHKNRVVGATALNDRSSRSHSVLTV----HVQGRDLTSGTILRGCLHLVDLAGSER-VDKSEATGDRLKEAQHINRSLSALGDVIAALAQKSSHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPELDAHGETISTLKFAERVATVELGAARSNKESGEVRELKEQIASLKNALAKKEA
D5ACB2______________VSDIQCVKEYIEKGNGARSTGSTGANEESSRSHAILQLTIKKHGEGKELKGGRTV-GKLSFIDLAGSERGADTTDNDRQTRMEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVGNSRTVMISCVSPNSGSCEHTLNTLRYADRVKGLSKSSNLKKDQSASSLSLPPKDSSSSPPLPLEDA

SNPs (tot: 57)

Position	A %	C %	G %	T %	Probability
348	10		90		0.90298
349	90			10	0.90298
390	11		88		0.923564
392		88	11		0.923564
410		87	12		0.992554
411	87		12		0.992554
429		14		85	0.993533
465	14			85	0.993533
468	14	85			0.993533
600	90			10	0.90298
605			88	11	0.923564
679			14	85	0.993533
681		85	14		0.993533
720		14		85	0.993533
1096	33			66	1.0
1136		16	83		0.994512
1146	66		33		1.0
1153	20			80	0.995493
1677	16	83			0.994512
1681			16	83	0.994512
1709	25		75		0.996473
1710		25	75		0.996473
1711	25		75		0.996473
1712			75	25	0.996473
1713			75	25	0.996473
1748	75			25	0.996473
1756	75			25	0.996473
1762	25	75			0.996473
1764		75		25	0.996473
1765	25	75			0.996473
1769		75	25		0.996473
1804			20	80	0.995493
1874	80		20		0.995493
1875		28		71	1.0
1877		14		28	1.0
1880			85	14	0.993533
1881		57	14		1.0
1882	85		14		0.993533
1885	57	28		14	1.0
1886			14	85	0.993533
1888		14	28	57	1.0
1889	71		28		1.0
1890		42		57	1.0
1892		14	28	57	1.0
1893	14			85	0.993533
1894		28	71		1.0
1897		28		71	1.0
1900	28	71			1.0
1986			12	87	0.992554
1990			88	11	0.923564
1991			11	88	0.923564
1992			11	88	0.923564
1993			11	88	0.923564
2025	10		90		0.90298
2037		90		10	0.90298
2343	16	83			0.994512
2344	60	20	20		0.99255

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain