SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4965

Length: 521 nt

UniGene Fasta

>sp_v3.0_unigene4965
GGGTAAACTTCGAGATGGGCAAACTGTAGCCATAAAGAGACTTTTTCAGGATAACTGTAGAAGAGTTGAACAGTTCATTAACGAGGTGGAGATATTTTCATCCTTGAGTCATCCACAATTAGTTCGTCTATTTGGTTGCACTAGTGCCGATAGTCCAGAGCTGCTTCTGGTATACGAATTTGTTCCAAATGGGACGCTGGCCGATCATCTTCATGGTAATCGCAAATGCCCAGAGGGATTACCGTGGAATACTCGCTTTAACATTGCTGTCCAAACAGCCAAGGCCTTGGCTTTCCTTCACGGCATCGATCCACCTATATTCCACAGAGATGTGAAATCCTCTAATATTCTCTTGGACGAGAATTTCAGTGGCAGATTTTGGGCTTTGCAGAATTGTGCCTGTCAACGCCTCACATGTAACCACTGCTCCACAAGGCACACCAGGGTATGTTGATCCGGAGTACCATCAGTGCTATCAATTGACGGAGAAATCCGATGTCTACAGCTTCGGAGTCGTTTTG

Ace file of the UniGene sp_v3.0_unigene4965

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein kinase domain-containing protein [Arabidopsis thaliana] gb\|AEE34567.1\| protein kinase domain-containing protein [Arabidopsis thaliana]	-	-	0.0	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Sma3	Putative wall-associated kinase 4	-	-	1.911e-22	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	1.384e-10	-
Sma3	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	9.846e-07	-

Source	Gene names
Sma3	At1g18390; At1g20650; At1g21230; At1g25390; At1g66880; At2g23450; At3g53840; At5g38210; At5g66790; B1250G12.24; B1250G12.30; B1642C07.38; F15H18.11; F15H18.25; F16F4.9; F26B6.10; F2J7.14; F4N21.1; F5K20_140; GSVIVT00000553001; GSVIVT00001785001; GSVIVT000

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	peptidyl-prolyl cis-trans isomerase activity	GO:0003755	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	EGF-type aspartate/asparagine hydroxylation site	IPR000152	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain	IPR001179	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	EGF-like calcium-binding	IPR001881	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Peptidoglycan-binding Lysin subgroup	IPR002482	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Argonaute/Dicer protein, PAZ	IPR003100	-	-
Sma3	Stem cell self-renewal protein Piwi	IPR003165	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	EGF-like domain	IPR006209	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3		IPR013091	-	-
Sma3	Heat shock protein 70	IPR013126	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Domain of unknown function DUF1785	IPR014811	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EGF-like calcium-binding, conserved site	IPR018097	-	-
Sma3	Ribosomal protein S14, conserved site	IPR018271	-	-
Sma3	Peptidoglycan-binding lysin domain	IPR018392	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G18390.2	-	61%
RefSeq	Arabidopsis thaliana	NP_001154349.1	protein kinase domain-containing protein [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002322064.1	predicted protein, partial [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPC1

Fln msg: Overlapping hits, possible frame ERROR between 376 and 369, Distance to subject end: 131 aas, your sequence is shorter than subject: 174 - 611

Fln protein: GKLRDGQTVAIKRLFQDNCRRVEQFINEVEIFSSLSHPQLVRLFGCTSADSPELLLVYEFVPNGTLADHLHGNRKCPEGLPWNTRFNIAVQTAKALAFLHGIDPPIFHRDVKSSNILLDENFxxxxFGLCRIVPVNASHVTTAPQGTPGYVDPEYHQCYQLTEKSDVYSFGVVL

Protein Length: 175

Fln nts: GGGTAAACTTCGAGATGGGCAAACTGTAGCCATAAAGAGACTTTTTCAGGATAACTGTAGAAGAGTTGAACAGTTCATTAACGAGGTGGAGATATTTTCATCCTTGAGTCATCCACAATTAGTTCGTCTATTTGGTTGCACTAGTGCCGATAGTCCAGAGCTGCTTCTGGTATACGAATTTGTTCCAAATGGGACGCTGGCCGATCATCTTCATGGTAATCGCAAATGCCCAGAGGGATTACCGTGGAATACTCGCTTTAACATTGCTGTCCAAACAGCCAAGGCCTTGGCTTTCCTTCACGGCATCGATCCACCTATATTCCACAGAGATGTGAAATCCTCTAATATTCTCTTGGACGAGAATTTCxxxxxxxxxxxxTTTGGGCTTTGCAGAATTGTGCCTGTCAACGCCTCACATGTAACCACTGCTCCACAAGGCACACCAGGGTATGTTGATCCGGAGTACCATCAGTGCTATCAATTGACGGAGAAATCCGATGTCTACAGCTTCGGAGTCGTTTTG

Fln Alignment:

Contig4965___GKLRDGQTVAIKRLFQDNCRRVEQFINEVEIFSSLSHPQLVRLFG-CTSADSPE---LLLVYEFVPNGTLADHLHGNRKCPEGLPWNTRFNIAVQTAKALAFL-HGIDPPIFHRDVKSSNILLDENFSGRVADFGLCRIVPVNASHVTTAPQGTPGYVDPEYHQCYQLTEKSDVYSFGVVL
B8LPC1______________GVLADGSLVAVKRFKNCSPAGDPEFVHEVDVISSIRHRNLVALRGFCVAPGSLEGHQRILVCEFIPNRSLHDNLFDHRRSERRLDWPTRCQIAVGMARGLAYLHHEIQPGIIHRDIKASNILLDENFNARVADFGLAKFAPEGVSHLSTRVAGTLGYVAPEYALYGQLTEKSDVYSFGVVL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain