SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4955

Length: 527 nt

UniGene Fasta

>sp_v3.0_unigene4955
GCCATGGCCGTGGCCGCCGTGGTGGAGCTCAAGCGGAAAGCCGTTGCCAGGGACCACTCCCTGCTGGACACGGACGAATCGTTGCCCATTTCGGTGTTCTGGCTTGGCTGGCAGTACCTCGTCCTGGGAATCGCGGATATGTTTACGTTGGCCGGCCTCCTCGAGTTTTTCTACAGCCAGGCCCCCTCGGGGATGAGATCGTTGTCCACCGCACTATCCTGGTGCTCGATATCGTCGGGCTACTACCTGAGCTCCGTGCTGGTGTCCGTGGTCAACAAAATAAGTGCGAGGCTCAGGAATGGTGTAGGGTGGCTTTCTGGCAACAATTTGAATCGTAATCATCTGGAGCTTTTCTATACGCTGCTCTGCGTTCTCACCTTTCTCAATTTCTTCCACTATCTGGCCTTGGGCGAGATGGTACAAATACAAATCTTGAATCTCTTTCTAGTAGATCGCTATATCCCTAGCGGGAAATCTCCATAGTGATCCCATATAAAAAGGCTATTTTCGATTTCAATATAAAAGCT

Ace file of the UniGene sp_v3.0_unigene4955

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative nitrate transporter [Oryza sativa Japonica Group]	-	-	9.0e-32	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Sma3	Nitrate transporter, putative	-	-	2.352e-20	-

Source	Gene names
Sma3	At1g27040; At1g59740; At1g68570; At1g69850; At1g69850/T17F3.12; At3g25260; At3g25280; At3g54140; B1026C12.10; F23H11.6; F24B22.100; F24J5.19; GSVIVT00000089001; GSVIVT00014744001; GSVIVT00022502001; GSVIVT00028984001; GSVIVT00030327001; GSVIVT00035792001;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	oligopeptide transport	GO:0006857	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	Membrane attack complex component/perforin/complement C9	IPR001862	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G27040.1	Major facilitator superfamily protein chr1:9386893-9390018 REVERSE LENGTH=567	2.0e-38	61%
RefSeq	Arabidopsis thaliana	NP_973919.1	putative peptide/nitrate transporter [Arabidopsis thaliana]	3.0e-38	61%
RefSeq	Populus trichocarpa	XP_002311879.1	predicted protein [Populus trichocarpa]	4.0e-38	61%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLJ8

Fln msg: your sequence is shorter than subject: 161 - 628

Fln protein: AMAVAAVVELKRKAVARDHSLLDTDESLPISVFWLGWQYLVLGIADMFTLAGLLEFFYSQAPSGMRSLSTALSWCSISSGYYLSSVLVSVVNKISARLRNGVGWLSGNNLNRNHLELFYTLLCVLTFLNFFHYLALGEMVQIQILNLFLVDRYIPSGKSP*

Protein Length: 162

Fln nts: GCCATGGCCGTGGCCGCCGTGGTGGAGCTCAAGCGGAAAGCCGTTGCCAGGGACCACTCCCTGCTGGACACGGACGAATCGTTGCCCATTTCGGTGTTCTGGCTTGGCTGGCAGTACCTCGTCCTGGGAATCGCGGATATGTTTACGTTGGCCGGCCTCCTCGAGTTTTTCTACAGCCAGGCCCCCTCGGGGATGAGATCGTTGTCCACCGCACTATCCTGGTGCTCGATATCGTCGGGCTACTACCTGAGCTCCGTGCTGGTGTCCGTGGTCAACAAAATAAGTGCGAGGCTCAGGAATGGTGTAGGGTGGCTTTCTGGCAACAATTTGAATCGTAATCATCTGGAGCTTTTCTATACGCTGCTCTGCGTTCTCACCTTTCTCAATTTCTTCCACTATCTGGCCTTGGGCGAGATGGTACAAATACAAATCTTGAATCTCTTTCTAGTAGATCGCTATATCCCTAGCGGGAAATCTCCATAG___TGATCCCATATAAAAAGGCTATTTTCGATTTCAATATAAAAGCT

Fln Alignment:

Contig4955___AMAVAAVVELKRKAVARDHSLLDTDE---SLPISVFWLGWQYLVLGIADMFTLAGLLEFFYSQAPSGMRSLSTALSWCXXXXXXXXXXXXXXXXNKISARLRNGVGWLSGNNLNRNHLELFYTLLCVLTFLNFFHYL
B8LLJ8______________SMVTAALVEAKRKRVARDTELMENPDNLMSLPLTIFWVAPQFLVFGLSEMFTAVGLIEFFYSQSPAGMQSLLTALTYCSYSFGFYLSGVLVSIVNKVTSTGSHG-GWLSDNNLNKDQLDLFYWLLAVLSFINFLNYI

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
259		66		33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain