SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4934

Length: 230 nt

UniGene Fasta

>sp_v3.0_unigene4934
GCAAAGCTCTCCTTTTTGCATAACATTTGGTTCCCCTTTAGTGGGAGATGCAAGACTTGTTGAGGCGGTTGGTCGTGAGAACTGGGGAGGCAATTTTTGTCACGTGGTTTCCAAGAACGATATTGTTCCTCGGGTGCTCCTGGCACCATTTGAGTCAACTGCTGAACCCCTGAATGCTCTTTTGCCTTACTGGTTGGCCAAAATAACCAATGACAGGAATGATGGACCTG

Ace file of the UniGene sp_v3.0_unigene4934

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Lipase, putative [Oryza sativa Japonica Group] gb\|ABA91873.1\| Lipase family protein, expressed [Oryza sativa Japonica Group]	-	-	3.0e-10	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Sma3	Putative uncharacterized protein	-	-	8.416e-06	-

Source	Gene names
Sma3	GSVIVT00019308001; VITISV_000646;

Source	GOs	Term	Type	e value	Identity
Sma3	triglyceride lipase activity	GO:0004806	Molecular Function	0.0	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Lipase, class 3	IPR002921	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G48090.1	EDS1, ATEDS1 alpha/beta-Hydrolases superfamily protein chr3:17755553-17757692 REVERSE LENGTH=623	2.0e-11	47%
RefSeq	Arabidopsis thaliana	NP_001030829.1	enhanced disease susceptibility 1 protein [Arabidopsis thaliana]	2.0e-11	47%
RefSeq	Populus trichocarpa	XP_002307051.1	PAD4 [Populus trichocarpa]	2.0e-17	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NPY6

Fln msg: Distance to subject end: 189 aas, your sequence is shorter than subject: 76 - 419

Fln protein: QSSPFCITFGSPLVGDARLVEAVGRENWGGNFCHVVSKNDIVPRVLLAPFESTAEPLNALLPYWLAKITNDRNDGP

Protein Length: 77

Fln nts: GCAAAGCTCTCCTTTTTGCATAACATTTGGTTCCCCTTTAGTGGGAGATGCAAGACTTGTTGAGGCGGTTGGTCGTGAGAACTGGGGAGGCAATTTTTGTCACGTGGTTTCCAAGAACGATATTGTTCCTCGGGTGCTCCTGGCACCATTTGAGTCAACTGCTGAACCCCTGAATGCTCTTTTGCCTTACTGGTTGGCCAAAATAACCAATGACAGGAATGATGGACCTG

Fln Alignment:

Contig4934___QSSPFCITFGSPLVGDARLVEAVGRENWGGNFCHVVSKNDIVPRVLLAPFESTAEPLNALLPYWLAKITNDRNDGP
A9NPY6______________QSSPFCITFGSPLVGDVRLVEAVGRENWANNFCHVVSKHDIVPRMLLAPFESIAEPLIAILPYWQGLIADDSKGEP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain