SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4928

Length: 389 nt

UniGene Fasta

>sp_v3.0_unigene4928
TATCTGACTTCTTTTCATCCGAATTCGCAGCGGGAATTGAAGGAATGGACCGGGACTGTAATTTCCACGCCGCGGGATTTTTTGTTTGCGTTCGTCGGTGCAGGGCGGCAAGGTCTAGGGATCCGCCGTGCGGTCATCGAGCAGTGCAGTAGTTCTTCGAAATGTGTGATGGTGAATTGTGCAAAGATGAAGTGCAGTCACAGGCCAGAGACCGTGATGAAGCAAGTGCTGAGGGCCAATTTCTGCCTGCAACCGCCCGGGGATTCCCCTACTCGGCGATCGACCTTCGACGGTTTGATTGCGGGATGTATACCGGTTTTTTTCAGAAATGACTCTGCATATGAGCAATACACATGGCACCCTTCTGACCCGGAAACCTATTCTGTTTT

Ace file of the UniGene sp_v3.0_unigene4928

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	exostosin-like protein [Arabidopsis thaliana] gb\|AAC33230.1\| hypothetical protein [Arabidopsis thaliana] gb\|ABE65870.1\| exostosin family protein [Arabidopsis thaliana] gb\|AEC08200.1\| exostosin-like protein [Arabidopsis thaliana]	-	-	3.0e-28	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Sma3	Xyloglucan galactosyltransferase KATAMARI1, putative	-	-	2.306e-15	-

Source	Gene names
Sma3	AT2G20370; At1g68470; At1g68470/T26J14_4; At2g20370; At2g29040; At2g31990; At2g32740; At2g32750; At4g13990; F11A3.8; GSVIVT00007298001; GSVIVT00024302001; GSVIVT00033532001; KAM1; LOC_Os03g05060; LOC_Os03g05070; LOC_Os03g05110; LOC_Os10g32170; MUR3; OJ117

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	integral to Golgi membrane	GO:0030173	Cellular Component	-
Sma3	peptidase activity	GO:0008233	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	beta-lactamase activity	GO:0008800	Molecular Function	-
Sma3	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	-
Sma3	signal peptide processing	GO:0006465	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	unidimensional cell growth	GO:0009826	Biological Process	-
Sma3	salicylic acid mediated signaling pathway	GO:0009863	Biological Process	-
Sma3	xyloglucan biosynthetic process	GO:0009969	Biological Process	-
Sma3	endomembrane system organization	GO:0010256	Biological Process	-
Sma3	antibiotic catabolic process	GO:0017001	Biological Process	-
Sma3	fucose biosynthetic process	GO:0042353	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Beta-lactamase, class-B, conserved site	IPR001018	-	-
Sma3	Peptidase S26B, eukaryotic signal peptidase	IPR001733	-	-
Sma3	Exostosin-like	IPR004263	-	-
Sma3	Peptidase S24/S26A/S26B	IPR019759	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G29040.1	Exostosin family protein chr2:12472425-12474962 REVERSE LENGTH=720	3.0e-34	49%
RefSeq	Arabidopsis thaliana	NP_180468.1	exostosin-like protein [Arabidopsis thaliana]	4.0e-34	49%
RefSeq	Populus trichocarpa	XP_002304426.1	predicted protein, partial [Populus trichocarpa]	1.0e-33	48%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NT31

Fln msg: Distance to subject end: 80 aas, your sequence is shorter than subject: 73 - 155

Fln protein: MVNCAKMKCSHRPETVMKQVLRANFCLQPPGDSPTRRSTFDGLIAGCIPVFFRNDSAYEQYTWHPSDPETYSV

Protein Length: 74

Fln nts: TATCTGACTTCTTTTCATCCGAATTCGCAGCGGGAATTGAAGGAATGGACCGGGACTGTAATTTCCACGCCGCGGGATTTTTTGTTTGCGTTCGTCGGTGCAGGGCGGCAAGGTCTAGGGATCCGCCGTGCGGTCATCGAGCAGTGCAGTAGTTCTTCGAAATGTGTG_-_ATGGTGAATTGTGCAAAGATGAAGTGCAGTCACAGGCCAGAGACCGTGATGAAGCAAGTGCTGAGGGCCAATTTCTGCCTGCAACCGCCCGGGGATTCCCCTACTCGGCGATCGACCTTCGACGGTTTGATTGCGGGATGTATACCGGTTTTTTTCAGAAATGACTCTGCATATGAGCAATACACATGGCACCCTTCTGACCCGGAAACCTATTCTGTTTT

Fln Alignment:

Contig4928___MVNCAKMKCSHRPETVMKQVLRANFCLQPPGDSPTRRSTFDGLIAGCIPVFFRNDSAYEQYTWH-PSDPETYSV
A9NT31______________MVNCAMLKCSHRPEAVMTELLKANFCLQPSGDSPTRRSTFDALIAGCIPVFFRRDSAYEQYTWHLPSDPETYSV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
306	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain