SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4901

Length: 1069 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene4901 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	3.0e-26	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	0.0	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQH3

Fln msg: Separated hits, possible frame ERROR between 602 and 709, and possible frame ERROR between 771 and 815, Unexpected STOP codon at 3' end. Distance to subject end: 72 aas, your sequence is shorter than subject: 149 - 247

Fln protein: MSSSVVGDVRESVQDVDVSGQLDVNQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxWGQYITDEEDECATGMAPRSxxxxxxxxxxxxxxxNSSHHLEDYYHDELAFHSNQPRNENCDDFDLEMALCKLLPVGLNCCKQVS*

Protein Length: 150

Fln nts: ATGGGATTAAAAGCAATTGAGGGCAAGTTTTGAAAGGATCGTCTGACCAGATCCTCGCATTCGGCCACATCGCACATAGAGATTCGTGGCGTTAAGCTGGTAAATTCCACGAATTTCTATCAATTGTGCTTGGATTCGAGCCTTCTGGTGTACGATTCGAGCCTTCTGGTCTAGGAATTCCTTATTGACGGCCTTGAAATTACATTTTCTAAGCTACGTGGGGTTTGATTTGGCCAATTTCATAGAGCATTTACATATAGGCATTCGACCGGCTGTTTGGGGTTTGATTTGGCCAATTTAGACCATTCGACCAGCAGTTTGGAGCGTTTATTAGCCTTTTTAAATCGAGAGACAAAAGAGCACGAAGGATTCAGCCATTCAGAAAACAGCCTATCTTTGAGCCAGCCAGCGGCGAGCTTTCTCGAATTCGACTCTACCGTTCGAATTTAGGTTGCTGCCGTTGCGAGAAGTGCTGTGTCTGCTTTGGCAGTGCAAGGCCGGGCGACGACGGCCTATTAAAA_-_ATGAGCAGTTCAGTGGTCGGTGATGTTCGCGAATCCGTTCAGGATGTCGATGTGTCAGGCCAATTGGATGTTAACCAGGCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTGGGGCCAGTACATTACTGATGAAGAGGATGAATGTGCTACGGGAATGGCCCCAAGATCTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAACTCTTCTCATCATTTAGAAGACTACTACCACGATGAACTTGCATTCCATTCGAATCAGCCGAGAAATGAAAACTGTGATGATTTTGACCTTGAAATGGCATTATGTAAGCTGCTTCCCGTGGGGTTGAATTGTTGCAAGCAAGTTTCATAGAATAATGGATTCTCATGATTTAACTTTTCCATCCAGTTAGCATTCATTAACTGACGCATTTCTTAAAGTTTGTTTTCTTTTATTGAATACCAACTTATTAAGTAG

Fln Alignment:

Contig4901___MSSSVVGDVRESVQDVDVSGQLDVNQAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxWGQYITDEEDECATGMAPRSGxxxxxxxxxxxxxxxSSHHLEDYYHDELAFHSNQPRNENCDDFDLEMAL
B8LQH3______________MSSSVVGAVPESVQDVNVSGQLDVNQAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxWGQYITDEEDETAVGMAPRSGxxxxxxxxxxxxxxxSSHHLEDYYQDELAFHANQPRNENCEDFDLEMAL

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
736	87		12		0.992554
744	87		12		0.992554
998		16		83	0.994512
999	83	16			0.994512
1000		16		83	0.994512
1001	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain