SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4888

Length: 180 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene4888
ATGGGTGCCAATTGAGCCACTCCCTGAAAGTGTTCAAATTCATCTCCTAGAACAGTATCCTGTTTTGGATTCCATCCAAAGATATTTATGGCCTCGATTATGTACTCTTGATCAACGAACCACTATATGAACTCCACTGCCAATTGAGCCACTCCCTGAAAGTGTTCAAATTCATCTCCT

Ace file of the UniGene sp_v3.0_unigene4888 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	Isoform 2 of Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME	-	-	0.0	76%
Sma3	Repressor of silencing 1	-	-	9.077e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Glycosylases, Hydrolyzing N-glycosyl compounds.	EC:3.2.2.-	-	1.387e-06	-

Source	Gene names
Sma3	At2g36490; At5g04560/At5g04570/At5g04580; DME; DML1; DNG1501; DNG701; DNG902; F1O11.12; GSVIVT00021675001; GSVIVT00022090001; GSVIVT00034990001; NtROS1; NtROS2a; NtROS2b; NtROS3; Os01g0217900; Os02g0494700; Os05g0445900; OsI_00912; OsI_07297; OsI_20143; O

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	DNA-(apurinic or apyrimidinic site) lyase activity	GO:0003906	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	DNA N-glycosylase activity	GO:0019104	Molecular Function	-
Sma3	4 iron, 4 sulfur cluster binding	GO:0051539	Molecular Function	-
Sma3	DNA repair	GO:0006281	Biological Process	-
Sma3	base-excision repair	GO:0006284	Biological Process	-
Sma3	DNA methylation	GO:0006306	Biological Process	-
Sma3	regulation of gene expression by genetic imprinting	GO:0006349	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	negative regulation of chromatin silencing	GO:0031936	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	HhH-GPD domain	IPR003265	-	-
Sma3	Endonuclease III-like, iron-sulphur cluster loop motif	IPR003651	-	-
Sma3	Endonuclease III, iron-sulphur binding site	IPR004035	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G36490.1	DML1, ROS1 demeter-like 1 chr2:15308259-15314272 REVERSE LENGTH=1393	1.0e-16	74%
RefSeq	Arabidopsis thaliana	NP_181190.3	protein ROS1 [Arabidopsis thaliana]	1.0e-16	74%
RefSeq	Populus trichocarpa	XP_002311968.1	predicted protein, partial [Populus trichocarpa]	2.0e-17	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8LK56-2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 354 aas, your sequence is shorter than subject: 43 - 674

Fln protein: WVPIEPLPESVQIHLLEQYPVLDSIQRYLWPRLCTLDQRTTI*

Protein Length: 44

Fln nts: ATGGGTGCCAATTGAGCCACTCCCTGAAAGTGTTCAAATTCATCTCCTAGAACAGTATCCTGTTTTGGATTCCATCCAAAGATATTTATGGCCTCGATTATGTACTCTTGATCAACGAACCACTATATGAACTCCACTGCCAATTGAGCCACTCCCTGAAAGTGTTCAAATTCATCTCCT

Fln Alignment:

Contig4888___WVPIEPLPESVQIHLLEQYPVLDSIQRYLWPRLCTLDQR
Q8LK56-2____________WVPLQPLPESLQLHLLELYPVLESIQKFLWPRLCKLDQR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain