SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4856

Length: 351 nt

UniGene Fasta

>sp_v3.0_unigene4856
CGTCGTGACCTTGGCTGTCACTCATTTCTTCGGCACTTGAGGCAACAGTTAAAATTGGGCTTAAACAAGGGTTGGCAAAAGGGATTGCCATAGGTGGCAACGGATCTGTAAGCTTTGCTTTGTGGGCATTCATTTCATGGTATGGAAGCAGATTGGTGATCAATCACGATGTGAGCGGCGGAATGATTTTTGGTGTAGGCTACTGCATAATCCTGGGTGGACTGTCTCTGGCTAGCGCGCTTCCAAATCTCAAGTACTTTTCTGAGGCAGGCGTTGCAGCTATTCGGATATTTAAGATGATTGACAGAGTACCAGAAATAGATTCAGAGGATGGGAAAGGCAAAGTATTGG

Ace file of the UniGene sp_v3.0_unigene4856

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Multidrug/pheromone exporter, MDR family, ABC transporter family (Fragment) n=1 Tax=Populus trichocarpa RepID=B9ILT9_POPTR	-	-	2.0e-31	62%
FL-Next	tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew).	-	-	0.0	26%
Sma3	Multidrug/pheromone exporter, MDR family, ABC transporter family	-	-	6.925e-20	-

Source	ECs	Term	Type	e value	Identity
Sma3	Xenobiotic-transporting ATPase.	EC:3.6.3.44	-	6.869e-10	-

Source	Gene names
Sma3	At3g28345; At3g28360; At3g28380; At3g28390; At3g28415; At3g30875; GSVIVT00016667001; GSVIVT00020846001; GSVIVT00027401001; GSVIVT00030719001; GSVIVT00035706001; LOC_Os02g09720; MDR13; MDR18; MDR19; MDR20; MDR21; MDR22; MFJ20.11; MFJ20.4; MFJ20.6; MFJ20.7;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G28415.1	ABC transporter family protein chr3:10647123-10651540 REVERSE LENGTH=1221	1.0e-35	58%
RefSeq	Arabidopsis thaliana	NP_683599.1	ABC transporter B family member 22 [Arabidopsis thaliana]	2.0e-35	58%
RefSeq	Populus trichocarpa	XP_002325023.1	multidrug/pheromone exporter, MDR family, ABC transporter family, partial [Populus trichocarpa]	7.0e-38	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: E6Y0T0

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 249 aas, your sequence is shorter than subject: 116 - 1316

Fln protein: S*PWLSLISSALEATVKIGLKQGLAKGIAIGGNGSVSFALWAFISWYGSRLVINHDVSGGMIFGVGYCIILGGLSLASALPNLKYFSEAGVAAIRIFKMIDRVPEIDSEDGKGKVL

Protein Length: 117

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTCTTCGGCACTTGAGGCAACAGTTAAAATTGGGCTTAAACAAGGGTTGGCAAAAGGGATTGCCATAGGTGGCAACGGATCTGTAAGCTTTGCTTTGTGGGCATTCATTTCATGGTATGGAAGCAGATTGGTGATCAATCACGATGTGAGCGGCGGAATGATTTTTGGTGTAGGCTACTGCATAATCCTGGGTGGACTGTCTCTGGCTAGCGCGCTTCCAAATCTCAAGTACTTTTCTGAGGCAGGCGTTGCAGCTATTCGGATATTTAAGATGATTGACAGAGTACCAGAAATAGATTCAGAGGATGGGAAAGGCAAAGTATTGG

Fln Alignment:

Contig4856___LSLISSALEATVKIGLKQGLAKGIAIGGNGSVSFALWAFISWYGSRLVINHDVSGGMIFGVGYCIILGGLSLASALPNLKYFSEAGVAAIRIFKMIDRVPEIDSEDGKGKVL
E6Y0T0______________ISLYNEKCSAPLKSGVKQGIIAGLGLGFSNFVMFTQYALSFWVGARLVEDGKTTFDKVFKVFFALSMAAAGISQSAGLSPDLAKAKSSINSVFKILDRPSKIDANDESGTIL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain