SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4827

Length: 286 nt

UniGene Fasta

>sp_v3.0_unigene4827
CGTCGTGACCTTGGCTGTCACTCATTGATACTCCGAAAGGGCTTCAAGATCAGACAGGGCTCTTGTTTTTCATTGCTGTTTTCTGGGGATTCTTCCCAGTTTTTACTACAATTTTTACATTTCCTCAAGAACGAGCCATGTTAGCAAAGGAGCGGGCAGTAGACATGTACAGACTAAGCGCATACTTTATGGCTCGAAACTTAAGTGACATGCCACTCGACCTCTTTCTTCCCGTTGTATATTTGCTCATAGTTTACTTCATGACAAACTTAAGAATGACGGTTGC

Ace file of the UniGene sp_v3.0_unigene4827

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	White-brown-complex ABC transporter family n=2 Tax=Populus trichocarpa RepID=B9IIG9_POPTR	-	-	9.0e-26	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Sma3	White-brown-complex ABC transporter family	-	-	5.659e-19	-

Source	ECs	Term	Type	e value	Identity
Sma3	Molybdate-transporting ATPase.	EC:3.6.3.29	-	9.259e-08	-

Source	Gene names
Sma3	At1g31770; At3g52310; At4g27420; At5g06530; CHLREDRAFT_180799; F27G19.20; F27M3.2; F5M6.22; GSVIVT00001167001; GSVIVT00002250001; GSVIVT00027138001; GSVIVT00027624001; GSVIVT00030260001; GSVIVT00031837001; LOC_Os03g06139; OJ1449_C01.55; OSJNBa0011L14.6; O

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G06530.2	ABC-2 type transporter family protein chr5:1990060-1994605 REVERSE LENGTH=751	4.0e-31	75%
RefSeq	Arabidopsis thaliana	NP_001031843.1	ABC transporter G family member 22 [Arabidopsis thaliana]	4.0e-31	75%
RefSeq	Populus trichocarpa	XP_002322764.1	white-brown-complex ABC transporter family [Populus trichocarpa]	5.0e-32	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNF9

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 140 aas, your sequence is shorter than subject: 94 - 819

Fln protein: S*PWLSLIDTPKGLQDQTGLLFFIAVFWGFFPVFTTIFTFPQERAMLAKERAVDMYRLSAYFMARNLSDMPLDLFLPVVYLLIVYFMTNLRMTV

Protein Length: 95

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGATACTCCGAAAGGGCTTCAAGATCAGACAGGGCTCTTGTTTTTCATTGCTGTTTTCTGGGGATTCTTCCCAGTTTTTACTACAATTTTTACATTTCCTCAAGAACGAGCCATGTTAGCAAAGGAGCGGGCAGTAGACATGTACAGACTAAGCGCATACTTTATGGCTCGAAACTTAAGTGACATGCCACTCGACCTCTTTCTTCCCGTTGTATATTTGCTCATAGTTTACTTCATGACAAACTTAAGAATGACGGTTGC

Fln Alignment:

Contig4827___WLSLIDTPKGLQDQTGLLFFIAVFWGXXXXXXXXXXXXQERAMLAKERAVDMYRLSAYFMARNLSDMPLDLFLPVVYLLIVYFMTNLRMTV
B8LNF9______________WQSNIDTPKGLQDQIGLIFFIAVFWGFFPVFTAIFTFPQERAMLSKERAVDMYRLSAYFMARILSDLPLDLFLPIGFLLIVYFMAHLRMTV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain