SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4821

Length: 1598 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene4821

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	EDGP (Fragment) n=1 Tax=Daucus carota RepID=Q05929_DAUCA	-	-	0.0	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Sma3	Basic 7S globulin 2 small subunit, putative	-	-	5.915e-15	-

Source	Gene names
Sma3	ACI25; At1g03220; EDGP1; F15K9.17; GSVIVT00019908001; GSVIVT00023703001; GSVIVT00028479001; GSVIVT00028495001; NEC4; OSJNBb0006J12.8; OsJ_04695; POPTRDRAFT_416930; POPTRDRAFT_581045; POPTRDRAFT_581047; POPTRDRAFT_581052; POPTRDRAFT_581054; POPTRDRAFT_6433

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase A1	IPR001461	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G03220.1	Eukaryotic aspartyl protease family protein chr1:787143-788444 FORWARD LENGTH=433	60%
RefSeq	Arabidopsis thaliana	NP_171821.1	aspartyl protease-like protein [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002308984.1	predicted protein, partial [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LN22

Fln msg: Separated hits, possible frame ERROR between 680 and 956,

Fln protein: MSPRPATALLFPFLLCALSSCNAALPQALVVNVTQDSATLQYIAQIQQKTPLQTESFVLDLTGDFLWVQCDNGTYKSSTYRPVLCRTVLCMEAESISCDYCYGPPAPGCNNNTCGVFPENTVTGTTTGGDLSQDVVAAYSTNGKKPGPQSHSPRIRLLLRAQLSYARTGQGSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDSARLKFDREGKGGTKLSSVVPYTIVATTYLHCDP*CFRRCSESEEHHACRLRKAIRCLLRCQYCVVHEGWTLGAHNRSCFAEKYYMEHFWSEFHGSGEQRSAMSWIR*RRCGSHYFHCHRDSADAE*SYPVRSCSLPTGFLLHVARLADHVFKLQLHLHRLTMLGIRTKFSSYFSANYENK*

Protein Length: 449

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTGCGTGCAATCCACACCGTCCTGCCTGCCTATGGAGGGCGAGTCTATTTATACAGTCGCTCGCACGATCAGTATTATATCATTGGAAAGTTATATATTTCTTCCAGCTTGAGAGAATTTGAGAGAGATTTATC_-_ATGTCTCCGCGCCCCGCTACGGCTCTCTTATTTCCATTCCTTTTGTGCGCACTTTCTTCTTGTAATGCCGCCTTACCCCAGGCCCTCGTTGTAAACGTCACTCAAGACTCGGCAACTTTGCAGTATATTGCCCAGATCCAGCAGAAGACTCCCCTTCAGACAGAGAGCTTCGTATTGGATCTCACGGGGGATTTCCTGTGGGTTCAATGCGACAATGGCACCTACAAATCCTCCACTTACCGCCCCGTTCTCTGCCGTACGGTGCTGTGCATGGAAGCAGAATCGATCTCCTGCGACTACTGCTACGGCCCTCCTGCCCCCGGCTGTAACAACAATACCTGCGGTGTCTTCCCAGAAAACACCGTCACCGGGACTACAACGGGCGGTGATCTATCGCAAGATGTAGTGGCTGCCTATTCCACCAACGGCAAAAAACCCGGGCCCCAAAGTCACAGCCCCCGGATTCGCCTTCTCCTGCGGGCCCAGCTTTCTTATGCAAGGACTGGCCAAGGGAGCATxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCGACTCCGCCAGATTGAAGTTTGACCGCGAAGGCAAAGGCGGCACCAAGCTCAGCTCCGTGGTTCCCTACACGATCGTTGCCACGACCTATTTACACTGCGATCCGTGATGCTTTCGTAGATGCAGCGAAAGCGAGGAACATCACGCGTGTCGCCTCCGTAAAGCCATTCGGTGCTTGCTTCGATGCCAGTACTGTGTTGTCCACGAGGGTTGGACCCTCGGTGCCCACAATCGGTCTTGTTTTGCAGAAAAATATTACATGGAGCATTTTTGGAGCGAATTCCATGGTTCAGGTGAGCAACGGAGCGCTATGTCTTGGATTCGTTGACGGAGGTGCGGATCCCATTACTTCCATTGTCATCGGGACTCAGCAGATGCAGAATAATCTTATCCAGTTCGATCTTGCAGCCTCCCGACTGGGTTTCTCCTCCACGTTGCTCGGCTCGCAGACCACGTGTTCAAACTTCAACTTCACCTCCACCGCTTAACGATGCTGGGCATAAGAACAAAGTTTTCTTCCTATTTTTCTGCAAATTATGAAAATAAATGA___ACGCTCGTTGTGATATAGCCAGGGAAGGATCTCAATGCTTATTTATTTAATCATATCGTGTTCAGTTTCCTTTCGTTAATAAAGAGATCCCCAC

Fln Alignment:

Contig4821___PQALVVNVTQDSATLQYIAQIQQKTPLQTESFVLDLTGDFLWVQCDNGTYKSSTYRPVLCRTVLCMEAESISCDYCYGPPAPGCNNNTCGVFPENTVTGTTTGGDLSQDVVAAYSTNGKKPGPQSHSPRIRLLLRAQLSYARTGQGSIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDSARLKFDREGKGGTKLSSVVPYTIVAT
B8LN22______________PRALVTQITQDPASQRYTVEIRQRTPLRIQRLVLDIEEDYMWVRCDNKSYISSTYSPLGCSAQLCKSYQYSGCGTCYGSRGPGCNNNTCVV----AVQGSRS-VELAQDVLVLPSSDGSNPGPLARFP--QLAFACDLSSNRVISGTVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDAEKLRFDKDGRGGTKLSTVVRYTQLAS

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
167			14	85	0.993533
168		85		14	0.993533
171		85		14	0.993533
173	14	85			0.993533
176		85		14	0.993533
177			85	14	0.993533
178		85	14		0.993533
179			14	85	0.993533
180	85	14			0.993533
181		85		14	0.993533
183			85	14	0.993533
185	14			85	0.993533
189	14			85	0.993533
192		18	9	72	0.999994
193			18	81	0.999994
196		81	18		0.999994
197	72	9		18	0.999994
198			18	81	0.999994
199	18			81	0.999994
204			27	72	1.0
205			18	81	0.999994
206		27	72		1.0
211	18		81		0.999994
213	81			18	0.999994
215	18			81	0.999994
458	57			42	1.0
468		60		40	1.0
540	85		14		0.993533
546		50	50		1.0
586	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain