SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4750

Length: 348 nt

UniGene Fasta

>sp_v3.0_unigene4750
CGTCGTGACCTTGGCTGTCACTCAGTTGGTCAAGGGGGAGGCGATTCAAACAATAATCTAGATGGTCATTACAGGAAACTGTTAGAGGCAAATCCCGGGCATCCACTGTTGTTGAGAAACTATGCGCGCTTCTCGTACGAGGTTCGGAATGATGTGAAGAAAGCAGAGGAATACTATGAAAGGGCGATACTGGCAAGCCCTGGTGATGCAGACGTCCTGTGTCTCTATGCCAATCTTATATGGGACGTTTACAACGACAAACGCCGTGCTGAATCATACTTCCATCGAGCTGTGGAAGCAGCGCCAGATGACTGCTATGTTGTTGGTGGGTATGCCAATTTCCTCTGG

Ace file of the UniGene sp_v3.0_unigene4750

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gb\|AED92812.1\| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana]	-	-	3.0e-30	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%

Source	Gene names
Sma3	AT4g17940; AT4g32340; At1g80130; At4g17940; At4g32340; At5g20190; F10M6.30; F18B13.21; F8B4.40; GSVIVT00000340001; GSVIVT00015736001; GSVIVT00016915001; LOC_Os10g42610; OSJNBa0027L23.7; Os06g0606700; Os10g0576600; OsI_23644; OsI_34773; OsJ_21918; OsJ_3257

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA-processing protein, HAT helix	IPR003107	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G20190.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr5:6814093-6815171 FORWARD LENGTH=290	1.0e-38	57%
RefSeq	Arabidopsis thaliana	NP_197519.1	tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana]	2.0e-38	57%
RefSeq	Populus trichocarpa	XP_002308981.1	predicted protein [Populus trichocarpa]	7.0e-39	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LR76

Fln msg: Distance to subject end: 27 aas, your sequence is shorter than subject: 116 - 387

Fln protein: RRDLGCHSVGQGGGDSNNNLDGHYRKLLEANPGHPLLLRNYARFSYEVRNDVKKAEEYYERAILASPGDADVLCLYANLIWDVYNDKRRAESYFHRAVEAAPDDCYVVGGYANFLW

Protein Length: 117

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTGGTCAAGGGGGAGGCGATTCAAACAATAATCTAGATGGTCATTACAGGAAACTGTTAGAGGCAAATCCCGGGCATCCACTGTTGTTGAGAAACTATGCGCGCTTCTCGTACGAGGTTCGGAATGATGTGAAGAAAGCAGAGGAATACTATGAAAGGGCGATACTGGCAAGCCCTGGTGATGCAGACGTCCTGTGTCTCTATGCCAATCTTATATGGGACGTTTACAACGACAAACGCCGTGCTGAATCATACTTCCATCGAGCTGTGGAAGCAGCGCCAGATGACTGCTATGTTGTTGGTGGGTATGCCAATTTCCTCTGG

Fln Alignment:

Contig4750___DSNNNLDGHYRKLLEANPGHPLLLRNYARFSYEVRNDVKKAEEYYERAILASPGDADVLCLYANLIWDVYNDKRRAESYFHRAVEAAPDDCYVVGGYANFLW
B8LR76______________NSKSSTDMYYQSMLEANPGNPLLLSNYAKFLHEVQHDMAKAEEYYGRAILASPGDAEVLSLYAKFTWETQNDGARAESYFDRAVKAAPDDCYVLSSYAHFLW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain