SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4749

Length: 551 nt

UniGene Fasta

>sp_v3.0_unigene4749
CGTCGTGACCTTGGCTGTCACTCAAATTTATTGTGTGAGAGATAGAAGTGGCAAAATTACTCAAGGGGGAGAGGACGATATACACACTGTGTATTATGCTTGGGCAATGCAGCAGATGGATGCTGAAGAAATGGGCGAGGGTGAATTGTATCCTACATGGAAGCTGAGGGAGATGCAGCAACTAGGAGTGCAATCCCTGATTTGATTAAGAGAGATGCAGCAACTAGGGAGTGCAATCCCTCATTTGATTTATTTAACTTTTCTTTTAAATGTTGTACTTTCCTACTATATGAACGAACTCATGGAAAGTGCACTGTACTGCTGTTGTAACCTCGGGGATTGCATCATTACGAACGTGCGATGGATGTATGCATAGTGGGTCAAATGATGCTTAGAAGATTCCCTGATTGCGAATTTTTAAATCTTTTTGATACAAAGACAGTAATTTCAAAAAGAGGTCAAATAAACTTGTATTGCGAGTTCATGTATGGCATAATTTTTTTTATTGGTCATGCCATATTTTTTATAGAACTTGTCTGTGCAAATTTTTG

Ace file of the UniGene sp_v3.0_unigene4749

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	translocase inner membrane subunit 44-2 [Arabidopsis thaliana] gb\|AAU94373.1\| At2g36070 [Arabidopsis thaliana] gb\|AEC09202.1\| translocase inner membrane subunit 44-2 [Arabidopsis thaliana]	-	-	5.0e-18	59%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	67%

Source	Gene names
Sma3	At2g20510; At2g36070; GSVIVT00028592001; Os07g0409700; OsI_25725; OsJ_23936; P0492E07.122; POPTRDRAFT_830077; POPTRDRAFT_831627; RCOM_1213600;

Source	GOs	Term	Type	Identity
Sma3	mitochondrial inner membrane presequence translocase complex	GO:0005744	Cellular Component	-
Sma3	P-P-bond-hydrolysis-driven protein transmembrane transporter activity	GO:0015450	Molecular Function	-
Sma3	protein-transmembrane transporting ATPase activity	GO:0015462	Molecular Function	-
Sma3	protein targeting to mitochondrion	GO:0006626	Biological Process	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Membrane transporter, Tim44-related/Ribosomal protein L45	IPR007379	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G36070.1	ATTIM44-2, TIM44-2 translocase inner membrane subunit 44-2 chr2:15145119-15147895 REVERSE LENGTH=469	3.0e-22	59%
RefSeq	Arabidopsis thaliana	NP_181151.3	translocase inner membrane subunit 44-2 [Arabidopsis thaliana]	3.0e-22	59%
RefSeq	Populus trichocarpa	XP_002300777.1	predicted protein [Populus trichocarpa]	9.0e-26	67%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D7U300

Fln msg: your sequence is shorter than subject: 68 - 484

Fln protein: VVTLAVTQIYCVRDRSGKITQGGEDDIHTVYYAWAMQQMDAEEMGEGELYPTWKLREMQQLGVQSLI*

Protein Length: 69

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTTATTGTGTGAGAGATAGAAGTGGCAAAATTACTCAAGGGGGAGAGGACGATATACACACTGTGTATTATGCTTGGGCAATGCAGCAGATGGATGCTGAAGAAATGGGCGAGGGTGAATTGTATCCTACATGGAAGCTGAGGGAGATGCAGCAACTAGGAGTGCAATCCCTGATTTGA___TTAAGAGAGATGCAGCAACTAGGGAGTGCAATCCCTCATTTGATTTATTTAACTTTTCTTTTAAATGTTGTACTTTCCTACTATATGAACGAACTCATGGAAAGTGCACTGTACTGCTGTTGTAACCTCGGGGATTGCATCATTACGAACGTGCGATGGATGTATGCATAGTGGGTCAAATGATGCTTAGAAGATTCCCTGATTGCGAATTTTTAAATCTTTTTGATACAAAGACAGTAATTTCAAAAAGAGGTCAAATAAACTTGTATTGCGAGTTCATGTATGGCATAATTTTTTTTATTGGTCATGCCATATTTTTTATAGAACTTGTCTGTGCAAATTTTTG

Fln Alignment:

Contig4749___VVTLAVTQIYCVRDRSGKITQGGEDDIHTVYYAWAMQQMDAEEMGEGELYPTWKLREMQQLGVQSLI
D7U300______________IVAFQTQQVYCVRSADGSIKEGGKDTIHTVYYAWAMQQVDAEELGEGAIYPIWRLREMQQLGVQALI

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
199		33	66		0.997452
227	80	20			0.995493
229			80	20	0.995493
233		25	75		0.996473
239	75			25	0.996473
240	75		25		0.996473
243	25	75			0.996473
265		25		75	0.996473
332			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain