SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4743

Length: 551 nt

UniGene Fasta

>sp_v3.0_unigene4743
CGTCGTGACCTTGGCTGTCACTCATATGTTATTGACTGTGGCAAGCACAAAGAAAATCACTACAATCCACAAAGGAGAATGTCAAGCATGGTGGAAGTGTGGATATCACAAGCAAATGCCAAACAGCGACGCGGCAGAGCAGGGCGTGTCAAACCTGGAGTTTGCTTTTGTCTTTATACCAAGTATCGCTATGAGAGACTGTTACGCCCTTTTCAGGTTCCTGAGATGCTTCGTGTGCCATTAGTGGAACTGTGCTTGCAGATCAAATCTCTGTCGTTAGGAGATGTGGGCTCCGTTCTTGGAAAGGCTATGGAACCTCCAAGAGAGGAATCTGTGCGCTCTGCGATAGCTACATTATATGAGGTTGGAGCTATTGAAGGTGATGAACAATTAACTTCCCTTGGACATCATTTGGCCAAACTTCCAGTGGATGTGCGCATTGGCAAGATGATGCTGCATGGAGCAGTATTTGGTTGTTTGGCCCCCATTCTAACAATTGCAGCTTGTCTAAGTTACAAGTCACCTTTCATCTCTCCAAAAGATGAGAAAAG

Ace file of the UniGene sp_v3.0_unigene4743

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	helicase associated domain-containing protein [Arabidopsis thaliana] gb\|AEE33493.1\| helicase associated domain-containing protein [Arabidopsis thaliana]	-	-	0.0	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	33%
Sma3	ATP-dependent RNA helicase, putative	-	-	3.955e-16	-

Source	Gene names
Sma3	At1g58050; At2g01130; At2g35920; B0308C03.3; B1143G03.7-1; Dhx57; F11I4_16; GSVIVT00003545001; GSVIVT00009138001; GSVIVT00018850001; GSVIVT00030427001; GSVIVT00035406001; GSVIVT00035410001; MICPUCDRAFT_45131; MICPUCDRAFT_45812; MICPUCDRAFT_47634; MICPUCDR

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	double-stranded RNA binding	GO:0003725	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	chalcone isomerase activity	GO:0045430	Molecular Function	-
Sma3	flavonoid biosynthetic process	GO:0009813	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	IPR000449	-	-
Sma3	Fructose-bisphosphate aldolase, class-I	IPR000741	-	-
Sma3	Double-stranded RNA-binding	IPR001159	-	-
Sma3	Single-stranded nucleic acid binding R3H	IPR001374	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	Chalcone isomerase, subgroup	IPR003466	-	-
Sma3	RWD domain	IPR006575	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Helicase-associated domain	IPR007502	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Domain of unknown function DUF1605	IPR011709	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	-
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G58060.1	RNA helicase family protein chr1:21489480-21501775 REVERSE LENGTH=1459	73%
RefSeq	Arabidopsis thaliana	NP_176103.2	helicase associated domain-containing protein [Arabidopsis thaliana]	73%
RefSeq	Populus trichocarpa	XP_002322777.1	predicted protein [Populus trichocarpa]	52%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADJ5

Fln msg: Distance to subject end: 233 aas, No stop codon before M and low homology subject, your sequence is shorter than subject: 157 - 348

Fln protein: MSSMVEVWISQANAKQRRGRAGRVKPGVCFCLYTKYRYERLLRPFQVPEMLRVPLVELCLQIKSLSLGDVGSVLGKAMEPPREESVRSAIATLYEVGAIEGDEQLTSLGHHLAKLPVDVRIGKMMLHGAVFGCLAPILTIAACLSYKSPFISPKDEK

Protein Length: 158

Fln nts: CGTCGTGACCTTGGCTGTCACTCATATGTTATTGACTGTGGCAAGCACAAAGAAAATCACTACAATCCACAAAGGAGA_-_ATGTCAAGCATGGTGGAAGTGTGGATATCACAAGCAAATGCCAAACAGCGACGCGGCAGAGCAGGGCGTGTCAAACCTGGAGTTTGCTTTTGTCTTTATACCAAGTATCGCTATGAGAGACTGTTACGCCCTTTTCAGGTTCCTGAGATGCTTCGTGTGCCATTAGTGGAACTGTGCTTGCAGATCAAATCTCTGTCGTTAGGAGATGTGGGCTCCGTTCTTGGAAAGGCTATGGAACCTCCAAGAGAGGAATCTGTGCGCTCTGCGATAGCTACATTATATGAGGTTGGAGCTATTGAAGGTGATGAACAATTAACTTCCCTTGGACATCATTTGGCCAAACTTCCAGTGGATGTGCGCATTGGCAAGATGATGCTGCATGGAGCAGTATTTGGTTGTTTGGCCCCCATTCTAACAATTGCAGCTTGTCTAAGTTACAAGTCACCTTTCATCTCTCCAAAAGATGAGAAAAG

Fln Alignment:

Contig4743___PFQVPEMLRVPLVELCLQIKSLSLGDVGSVLGKAMEPPREESVRSAIATLYEVGAIEGDEQLTSLGHHLAKLPVDVRIGKMMLHGAVFGCLAPILTIAACLSYKSPFISPKD
D5ADJ5______________PNPVPEIQRTNLGNVVLLLKSLNIENLLDF--DFMDPPPQDNILNSMYQLWVLGALDNVGRLTALGRKMVEFPLDPPLAKMLLIGEQLGCVNEVLTIVSMLSVPSVFFRPKD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain