SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4742

Length: 219 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene4742
CGTCGTGACCTTGGCTGTCACTCATGCAGGTTTCACAGGCGCAAAATGCTTTTGCTGTATCTAATGGAAAGCCACAGCAAAAGAAAGATAAATTTGAACCTAAATCAGCAATTTGGGCAGATACACTCAGTCGGGGTCTCGTTGATTTGAATATTTCTGGACCAAAAATCAATCCTTTGGCAGATATTGGAATTGATTTAGATTCCATCAGCAGGTTGG

Ace file of the UniGene sp_v3.0_unigene4742 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Epsin, N-terminal; ENTH/VHS [Medicago truncatula]	-	-	5.0e-14	62%
FL-Next	sp=Clathrin interactor EPSIN 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	57%

Source	Gene names
Sma3	At2g43160; At2g43170; At3g59290; At3g59290/F25L23_150; Epsin; F25L23_150; GSVIVT00032147001; GSVIVT00033588001; MtrDRAFT_AC157893g11v2; OJ1111_C07.17-1; OJ1111_C07.17-2; OSJNBa0049O12.8; OsI_09354; OsJ_08790; PHYPADRAFT_161419; POPTRDRAFT_246517; POPTRDRA

Source	GOs	Term	Type	e value	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Epsin domain, N-terminal	IPR001026	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	ENTH/VHS	IPR008942	-	-
Sma3	Epsin-like, N-terminal	IPR013809	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G59290.1	ENTH/VHS family protein chr3:21912796-21917474 FORWARD LENGTH=1024	9.0e-18	57%
RefSeq	Arabidopsis thaliana	NP_567079.1	clathrin interactor EPSIN 3 [Arabidopsis thaliana]	1.0e-17	57%
RefSeq	Populus trichocarpa	XP_002320455.1	predicted protein, partial [Populus trichocarpa]	2.0e-19	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q93YP4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 160 aas, your sequence is shorter than subject: 72 - 1024

Fln protein: S*PWLSLMQVSQAQNAFAVSNGKPQQKKDKFEPKSAIWADTLSRGLVDLNISGPKINPLADIGIDLDSISRL

Protein Length: 73

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGCAGGTTTCACAGGCGCAAAATGCTTTTGCTGTATCTAATGGAAAGCCACAGCAAAAGAAAGATAAATTTGAACCTAAATCAGCAATTTGGGCAGATACACTCAGTCGGGGTCTCGTTGATTTGAATATTTCTGGACCAAAAATCAATCCTTTGGCAGATATTGGAATTGATTTAGATTCCATCAGCAGGTTGG

Fln Alignment:

Contig4742___LSLMQVSQAQNAFAVSNGK----PQQKKDKFEPKSAIWADTLSRGLVDLNISGPKINPLADIGIDLDSISR
Q93YP4______________LSSLETSASQPSLTPLTGAIEIVPQNQK-KFEPKSTIWADTLSRGLVNFNISGPKTNPLADIGVDFEAINR

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
80	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain