SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4733

Length: 874 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene4733

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein SET DOMAIN GROUP, putative n=1 Tax=Ricinus communis RepID=B9T3H1_RICCO	-	-	0.0	40%
FL-Next	sp=Protein SET DOMAIN GROUP 40; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	38%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q6NQJ8

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 279 - 491

Fln protein: S*PWLSLIYARERYMQGEQVLLCYGQYTNLELLEHYGFILSDNPNDKIYIDLDVDMSTVKQWERNHLYLQWDGKPSFSLLAALRYHKTPPNLRKAIGHLAFSGLRISVENDTTVNKWLLERCENLITKLPTTREEDELLQEIINRCLDFDGNQFLLDLLQDIEMGKCDDNCILLDSFPKWSRLCSKRRNIVTSEIRTFYKLHWLQTHKGMDLSRKSEASPALDRWKLAIQWRLRYKTILHRCILHCNDQLEHLCTAAESGKQDQANPTKRCGKLRSRR*

Protein Length: 280

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTATGCAAGGGAGCGATATATGCAAGGAGAACAGGTCCTGCTGTGCTATGGGCAATATACAAACTTGGAGCTCCTTGAGCATTATGGATTCATTCTCAGTGATAATCCAAATGACAAGATATATATTGACTTGGATGTTGATATGTCGACTGTGAAACAGTGGGAGAGAAATCACCTTTATTTGCAGTGGGATGGCAAACCTTCATTTTCCTTGCTAGCTGCTTTACGATATCATAAAACACCGCCAAATCTTCGCAAGGCGATTGGACATCTTGCGTTTTCAGGATTGCGAATATCTGTTGAAAATGACACAACTGTCAATAAGTGGCTTTTAGAGAGATGTGAAAACCTTATTACAAAGCTACCCACAACAAGAGAGGAAGATGAATTACTGCAGGAAATAATCAACAGGTGTCTTGATTTTGATGGGAATCAATTCCTTTTAGATCTTTTGCAGGATATAGAAATGGGCAAATGCGACGATAATTGCATATTGCTGGACAGTTTTCCCAAATGGTCCAGACTTTGCTCAAAAAGGCGCAATATAGTAACTAGTGAAATAAGAACATTCTATAAGTTGCACTGGTTGCAGACACACAAAGGCATGGACTTGTCTCGTAAATCGGAAGCTAGTCCTGCTTTAGATAGATGGAAGCTGGCCATCCAGTGGAGATTGAGATACAAGACAATTCTTCATCGTTGTATTTTACACTGTAATGATCAGCTTGAACATCTTTGTACAGCAGCAGAGTCTGGTAAACAAGACCAGGCAAATCCCACCAAGCGTTGTGGTAAACTAAGATCGCGGAGATAA___GAGATGGACTACCTTATTCATATTATCTTGCATTA

Fln Alignment:

Contig4733___IYARERYMQGEQVLLCYGQYTNLELLEHYGFILSDNPNDKIYIDLDVDM-STVKQWERNHLYLQWDGKPSFSLLAALRYHKTPPNLR-KAIGHLAFSGLRISVENDTTVNKWLLERCENLITKLPTTREEDELLQEIINRCLDFDGNQFLLDLLQDIEMGKCDDNCILLDSFPKWSRLCSKRRNIVTSEIRTFYKLHWL-----QTHKGMDLSRKSEASPALDRWKLAIQWRLRYKTILHRCILHCNDQLEHL
Q6NQJ8______________LYARRNYQLGEQVLLCYGTYTNLELLEHYGFMLEENSNDKVFIPLETSLFSLASSWPKDSLYIHQDGKLSFALISTLRLWLIPQSQRDKSVMRLVYAGSQISVKNEILVMKWMSEKCGSVLRDLPTSVTEDTVLLHNI-------------DKLQDPEL-----------------RLEQKETEAFGSEVRAFLDANCLWDVTVLSGKPIEFSRKT--SRMLSKWRWSVQWRLSYKRTLADCISYCNEKMNNL

SNPs (tot: 3)

Position	A %	G %	T %	Probability
585	80		20	0.995493
586	80	20		0.995493
587		20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain