SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4721

Length: 2609 nt

UniGene Fasta

>sp_v3.0_unigene4721
CGTCGTGACCTTGGCTGTCAATCAGGTTAGAGAGGGTAAAGAGGAAAACGTTGCGGAGAGAGCGCCCGACGGATCTTTTGCGGCAACAAAGCCATTCATTTTGCATCATTGCGAGTTTTTGGTTGGTTTTTGATCGGCCAAGATGGAGAAAGCAGAAGACTTAGCAGGGATGAGCAGCAGGAGACCCGAGGAGGAAGAAGAGGAGGCTGAGGCTCACAGTGAGAGTAGCGATTACACCTCGTCTGAAGACGAGGGCACGGACGATTACAGGCGAGGAGGATACCACGCTGTGCGGATTGGCGACTCTTTCAAGGGAGGGAGATATGTTGTCCAGTCGAAGCTGGGATGGGGTCATTTCTCCACTGTCTGGCTTGCCTGGGATACCCAAAACAATAGATATGTGGCATTGAAGGTACAGAAGAGTGCACAGCATTACACAGAGGCAGCCATGGATGAGATTGCAATACTGAAGCAAATAGCAGAAGGGGATGTAGATGACGAGAAGTGTGTGGTTAAATTGCTGGATCATTTCAAGCACACTGGACCGAATGGGCAGCACGTGTGTATGGTTTTTGAGTTCTTAGGAGACAATTTGTTGACTCTTATCAAGTATTATGACTACAGGGGCATGCCCCTGCACATGGTGAAGGAAATTTGCTTTTCTGTATTGGTAGGATTGGACTACTTGCACCGGCAGCTTTCTATTATTCACACGGATCTCAAGCCTGAGAACATTCTCCTCTTGTCTACAATTGACCCTGCCAAAGATCCTAGGAAATCTGGTACTTCGCCCCTGCTTTTCCCTAACAAAAATAAGTCCATATTCCCTTTAAATTCTTCCCTCCTTAAGGAGGGTAAAAGTGCAAATGGAGGGTTGTCAAGGAATCAGAAGAAGAAATTGAGACGCAATGCCAAGAAAGCAGCGAAGGCTTGTGTAAATAGTGTTGATGACCCAGAAAATGGTCTTGCACCTGAAAACCGGAAAGATACCATTGAATCTCAAGGGGGGAAATCAGATGGCAATTCTCAAGGCAACCTAGGTGAAAATGCTTCAAGCAAAAAAACCCCGGATGCCTCTGTGGAAGCAACAGAGGTTGAAAAGCACCATAAAACTTACAGAAAAGTCAGCCGTATGACGAGACAGAGATTGTTGGCATCTCTCGATCTCAAGTGCAAGTTGGTTGATTTTGGCAATGCGTGCTGGACCTACAAGCAGTTCACGAGTGATATTCAAACAAGGCAATATAGATGCCCAGAGGTTCTTCTTGGATCAAAATACTCTACGTCAGCAGACATTTGGTCCTTTGCATGCATTGCCTTTGAGCTTGCAACCGGTGATGTACTGTTTGATCCTCATAGTGGAGACAACTTTGACAGAGATGAGGATCATCTGGCCTTAATGATGGAGCTTCTTGGAATGATGCCTCGGAAAATTGCTTTAGGTGGACGGTATTCTCGTGACTTTTTCAACAGGCATGGTGATCTAAGACATATTCGGCGGCTACGGTTTTGGCCATTGAACAAAGTGCTTGAAGAAAAATATAATTTTCCTGGACAAGATGCAAATGAATTTGCTGATTTTCTCATTCCACTCTTAGACTTTGTACCTGAGAAGCGCCCCACTGCAGAACAAGCTCTTCTTCACCCGTGGTTTAATGCTGTACCTCGGCTACTTGAACCATCAGTGCCCTCTGGGCAAACTGAGAATTGTAATGAGGCTCTCCTGGAAAAGAAGACAAGTGACAAAAGTGCAATAGAGGCTGTGAAGAATGCTGAAGTAGCAATGGGAAATATCGCCATTGAAGGCAGTCAATCAGATGATGCCAGAAAGTCTATAAAAGTTTCACATGACAGAGGGAAGATGTCCACAAATTTAAGATAGTTTCTCAAATTGGGGATTGTCTCAACTTTGAAATGAAGGTAAAATCTGTGTTATCACACCACTATCTTGGACGGTGCTGCTGAAGAATTATAAGCCTCTCTTATTTTGCAGATAAGTTTGAAGGAAACAAGCATAATTGGTTGCTTTTGCATGGAATTTGGCACAACAAAGTGTAAGATCTGCCTGGTGTCTGCATCCCTTTTTCTCCTACCTGTTTAAGACTTGGAAAGTGTTAATGAGTGGTTTTAGGATTCTCAAGATCTTCTCCAGTTGTCATGATAACTTCAGACTGCATTCTGGTTCGCCAAATGTAAGGACACAGCCTGTGCTCTGGCTTGCAAAGGGATCAAGTTGCAACCGTTTCCTCTTTGATAAAGATCAAGTTCTTTATCTTCTGAACATCCCTTTTTAAGGAAGTAGACATTACTGTTTGGGACATCCAGATAAGTTCTACAACTAGATGAAGGCATATTATTGACTGATACTCGATAGTGGTCTCAAGTTTGATCATTGATGGGGTTCATTGTACAAGTGCTATTGTGTTATTCGTTGATTATAGGATTGGTGAACTTACATTCGATTGAGTTTAACTTTCTCTATTACAAGAGAATTAGATTGTATTTGTTGCAACATGACTATGATTGCTGAAGTGAAAAACATTTTGTTGAACTATGCTGATATATTTTGGATGTATGTGGCTGCATTGCACACCTTTAGTAATATGCAT

Ace file of the UniGene sp_v3.0_unigene4721

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ser/arg-rich protein kinase 4 [Arabidopsis thaliana] gb\|AEE79027.1\| ser/arg-rich protein kinase 4 [Arabidopsis thaliana]	-	-	0.0	65%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	69%
Sma3	Srpk, putative	-	-	9.075e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3	Dual-specificity kinase.	EC:2.7.12.1	-	4.121e-09	-

Source	Gene names
Sma3	AT4g35500; At2g17530; At3g44850; At4g35500; At4g35500/F8D20_10; At5g22840; CHLREDRAFT_105706; F28D10_40; F8D20.10; F8J2_200; GSVIVT00019335001; GSVIVT00021715001; GSVIVT00022115001; LOC_Os03g53720; MICPUCDRAFT_2123; MICPUN_67331; MtrDRAFT_AC139525g30v2; O

Source	GOs	Term	Type	Identity
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G53030.1	SRPK4 ser/arg-rich protein kinase 4 chr3:19662412-19664362 FORWARD LENGTH=529	65%
RefSeq	Arabidopsis thaliana	NP_566977.1	ser/arg-rich protein kinase 4 [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002328188.1	predicted protein [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6GW67

Fln msg: your sequence is longer than subject: 580 - 548

Fln protein: MEKAEDLAGMSSRRPEEEEEEAEAHSESSDYTSSEDEGTDDYRRGGYHAVRIGDSFKGGRYVVQSKLGWGHFSTVWLAWDTQNNRYVALKVQKSAQHYTEAAMDEIAILKQIAEGDVDDEKCVVKLLDHFKHTGPNGQHVCMVFEFLGDNLLTLIKYYDYRGMPLHMVKEICFSVLVGLDYLHRQLSIIHTDLKPENILLLSTIDPAKDPRKSGTSPLLFPNKNKSIFPLNSSLLKEGKSANGGLSRNQKKKLRRNAKKAAKACVNSVDDPENGLAPENRKDTIESQGGKSDGNSQGNLGENASSKKTPDASVEATEVEKHHKTYRKVSRMTRQRLLASLDLKCKLVDFGNACWTYKQFTSDIQTRQYRCPEVLLGSKYSTSADIWSFACIAFELATGDVLFDPHSGDNFDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLEEKYNFPGQDANEFADFLIPLLDFVPEKRPTAEQALLHPWFNAVPRLLEPSVPSGQTENCNEALLEKKTSDKSAIEAVKNAEVAMGNIAIEGSQSDDARKSIKVSHDRGKMSTNLR*

Protein Length: 581

Fln nts: CGTCGTGACCTTGGCTGTCAATCAGGTTAGAGAGGGTAAAGAGGAAAACGTTGCGGAGAGAGCGCCCGACGGATCTTTTGCGGCAACAAAGCCATTCATTTTGCATCATTGCGAGTTTTTGGTTGGTTTTTGATCGGCCAAG_-_ATGGAGAAAGCAGAAGACTTAGCAGGGATGAGCAGCAGGAGACCCGAGGAGGAAGAAGAGGAGGCTGAGGCTCACAGTGAGAGTAGCGATTACACCTCGTCTGAAGACGAGGGCACGGACGATTACAGGCGAGGAGGATACCACGCTGTGCGGATTGGCGACTCTTTCAAGGGAGGGAGATATGTTGTCCAGTCGAAGCTGGGATGGGGTCATTTCTCCACTGTCTGGCTTGCCTGGGATACCCAAAACAATAGATATGTGGCATTGAAGGTACAGAAGAGTGCACAGCATTACACAGAGGCAGCCATGGATGAGATTGCAATACTGAAGCAAATAGCAGAAGGGGATGTAGATGACGAGAAGTGTGTGGTTAAATTGCTGGATCATTTCAAGCACACTGGACCGAATGGGCAGCACGTGTGTATGGTTTTTGAGTTCTTAGGAGACAATTTGTTGACTCTTATCAAGTATTATGACTACAGGGGCATGCCCCTGCACATGGTGAAGGAAATTTGCTTTTCTGTATTGGTAGGATTGGACTACTTGCACCGGCAGCTTTCTATTATTCACACGGATCTCAAGCCTGAGAACATTCTCCTCTTGTCTACAATTGACCCTGCCAAAGATCCTAGGAAATCTGGTACTTCGCCCCTGCTTTTCCCTAACAAAAATAAGTCCATATTCCCTTTAAATTCTTCCCTCCTTAAGGAGGGTAAAAGTGCAAATGGAGGGTTGTCAAGGAATCAGAAGAAGAAATTGAGACGCAATGCCAAGAAAGCAGCGAAGGCTTGTGTAAATAGTGTTGATGACCCAGAAAATGGTCTTGCACCTGAAAACCGGAAAGATACCATTGAATCTCAAGGGGGGAAATCAGATGGCAATTCTCAAGGCAACCTAGGTGAAAATGCTTCAAGCAAAAAAACCCCGGATGCCTCTGTGGAAGCAACAGAGGTTGAAAAGCACCATAAAACTTACAGAAAAGTCAGCCGTATGACGAGACAGAGATTGTTGGCATCTCTCGATCTCAAGTGCAAGTTGGTTGATTTTGGCAATGCGTGCTGGACCTACAAGCAGTTCACGAGTGATATTCAAACAAGGCAATATAGATGCCCAGAGGTTCTTCTTGGATCAAAATACTCTACGTCAGCAGACATTTGGTCCTTTGCATGCATTGCCTTTGAGCTTGCAACCGGTGATGTACTGTTTGATCCTCATAGTGGAGACAACTTTGACAGAGATGAGGATCATCTGGCCTTAATGATGGAGCTTCTTGGAATGATGCCTCGGAAAATTGCTTTAGGTGGACGGTATTCTCGTGACTTTTTCAACAGGCATGGTGATCTAAGACATATTCGGCGGCTACGGTTTTGGCCATTGAACAAAGTGCTTGAAGAAAAATATAATTTTCCTGGACAAGATGCAAATGAATTTGCTGATTTTCTCATTCCACTCTTAGACTTTGTACCTGAGAAGCGCCCCACTGCAGAACAAGCTCTTCTTCACCCGTGGTTTAATGCTGTACCTCGGCTACTTGAACCATCAGTGCCCTCTGGGCAAACTGAGAATTGTAATGAGGCTCTCCTGGAAAAGAAGACAAGTGACAAAAGTGCAATAGAGGCTGTGAAGAATGCTGAAGTAGCAATGGGAAATATCGCCATTGAAGGCAGTCAATCAGATGATGCCAGAAAGTCTATAAAAGTTTCACATGACAGAGGGAAGATGTCCACAAATTTAAGATAG___TTTCTCAAATTGGGGATTGTCTCAACTTTGAAATGAAGGTAAAATCTGTGTTATCACACCACTATCTTGGACGGTGCTGCTGAAGAATTATAAGCCTCTCTTATTTTGCAGATAAGTTTGAAGGAAACAAGCATAATTGGTTGCTTTTGCATGGAATTTGGCACAACAAAGTGTAAGATCTGCCTGGTGTCTGCATCCCTTTTTCTCCTACCTGTTTAAGACTTGGAAAGTGTTAATGAGTGGTTTTAGGATTCTCAAGATCTTCTCCAGTTGTCATGATAACTTCAGACTGCATTCTGGTTCGCCAAATGTAAGGACACAGCCTGTGCTCTGGCTTGCAAAGGGATCAAGTTGCAACCGTTTCCTCTTTGATAAAGATCAAGTTCTTTATCTTCTGAACATCCCTTTTTAAGGAAGTAGACATTACTGTTTGGGACATCCAGATAAGTTCTACAACTAGATGAAGGCATATTATTGACTGATACTCGATAGTGGTCTCAAGTTTGATCATTGATGGGGTTCATTGTACAAGTGCTATTGTGTTATTCGTTGATTATAGGATTGGTGAACTTACATTCGATTGAGTTTAACTTTCTCTATTACAAGAGAATTAGATTGTATTTGTTGCAACATGACTATGATTGCTGAAGTGAAAAACATTTTGTTGAACTATGCTGATATATTTTGGATGTATGTGGCTGCATTGCACACCTTTAGTAATATGCAT

Fln Alignment:

Contig4721___YRRGGYHAVRIGDSFKGGRYVVQSKLGWGHFSTVWLAWDTQNNRYVALKVQKSAQHYTEAAMDEIAILKQIAEGDVDDEKCVVKLLDHFKHTGPNGQHVCMVFEFLGDNLLTLIKYYDYRGMPLHMVKEICFSVLVGLDYLHRQLSIIHTDLKPENILLLSTIDPAKDPRKSGTSPLLFPNKNKSIFPLNSSLLKEGKSANGGLSRNQXXXXXXXXXXXXXXCVN--SVDDPE-NGLAPENRKDTIESQGGKSDGNSQGN-LGENASSKKTPDASV---EATEVEKHHKTYRKVSRMTRQRLLASLDLKCKLVDFGNACWTYKQFTSDIQTRQYRCPEVLLGSKYSTSADIWSFACIAFELATGDVLFDPHSGDNFDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLEEKYNFPGQDANEFADFLIPLLDFVPEKRPTAEQALLHPWFNAVPRLLEPSVPSGQTENCNEALLEKKTSDKSAIEAVKNAEVAMGNIAIEG-SQSDDARKSIK
F6GW67______________YRRGGYHAVRIGDTFKNGRYVVQAKLGWGHFSTVWLAWDTQKSKYVALKVQKSAKHYTEAAMDEITILKQIAEGDPDDKRCVVKLLDHFKHSGPNGQHVCMVFEYLGDNLLTLIKYADYRGTPLHMVKEICFHILVGLDYLHHQLSIIHTDLKPENVLLLSMIDPSKDPRKSGASLILPTSRDKIVSEPAAS--KDTKNMNGDLTKNQKKKIRRKAKRAAQGCMGKEASDDPELDAKAPD-------SEDSNNDANSNGDSVEEQQNSSVIKSSSVNTDDVKDVRRENQGRRRGSRSTRQKLLAEVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADLWSFACICFELVTGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLNKVLTEKYEFSEQDANDIADFLVPILDFVPEKRPTAAQCLTHPWINAGPRLREPSIAS-LPKATDGGVSEKRERDER--EAM---EVGVGNIAIDGPSKSDKEPQSIQ

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
111			33	66	1.0
465	87		12		0.992554
467	87		12		0.992554
577	87		12		0.992554
791	42		57		1.0
840		25		75	0.996473
944		33		66	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain