SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4697

Length: 372 nt

UniGene Fasta

>sp_v3.0_unigene4697
CTCGGTCACAATGGCATGTGTTCTTCCAGCATGTGCCGGATTGGCATTATTGCAACAGGGAAAGGAGATTCATAATTACATAGTTAGAAGTAGTGTTGATAATAGTGTTTCTGTATGGAATGCTCTCATAGATATGTATGCCAAATGCGGTTGTATAAACAATGCACGTAGGGTTTTTGACAAGATGCCTGAAAGAGATATAGTCTCTTGGACTGCAATGATCACAGGTTATGGTGTACATGGCCATGGTAAAGATGCCCTTGCACTGTTTTCCCAAATGCAACAAACAGGCATAAAGCCAAATCGCATTACATTCACCTGTGTCCTGTCGGCTTGCAGTCATGCAGGCCTCGTGGATGAAGGTTTGGATTA

Ace file of the UniGene sp_v3.0_unigene4697

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative pentatricopeptide repeat protein [Gossypium hirsutum]	-	-	4.0e-35	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Sma3	Pentatricopeptide repeat-containing protein, putative	-	-	0.0	-

Source	Gene names
Sma3	A_TM021B04.2; At1g11290; At1g28690; At3g03580; At3g16610; At3g22150; At3g23330; At3g29230; At3g46790; At3g49140; At3g53360; At3g57430; At4g14820; At4g18750; At4g30700; At5g16860; At5g27110; At5g66520; B1032F05.19; B1046G12.4; B1358B12.23; CRR2; DYW9; F1K2

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	deaminase activity	GO:0019239	Molecular Function	-
Sma3	purine ribonucleoside monophosphate biosynthetic process	GO:0009168	Biological Process	-
Sma3	phloem or xylem histogenesis	GO:0010087	Biological Process	-
Sma3	leaf vascular tissue pattern formation	GO:0010305	Biological Process	-
Sma3	cotyledon vascular tissue pattern formation	GO:0010588	Biological Process	-
Sma3	mRNA modification	GO:0016556	Biological Process	-
Sma3	chloroplast RNA processing	GO:0031425	Biological Process	-
Sma3	polycistronic mRNA processing	GO:0031426	Biological Process	-
Sma3	leaf development	GO:0048366	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Adenosine/AMP deaminase domain	IPR001365	-	-
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	JmjC domain	IPR003347	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3		IPR013129	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G18750.1	DOT4 Pentatricopeptide repeat (PPR) superfamily protein chr4:10304850-10307465 FORWARD LENGTH=871	5.99994e-41	55%
RefSeq	Arabidopsis thaliana	NP_193610.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	8.00001e-41	55%
RefSeq	Populus trichocarpa	XP_002313416.1	predicted protein [Populus trichocarpa]	9.99995e-41	54%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQA8

Fln msg: Distance to subject end: 248 aas, your sequence is shorter than subject: 123 - 795

Fln protein: SVTMACVLPACAGLALLQQGKEIHNYIVRSSVDNSVSVWNALIDMYAKCGCINNARRVFDKMPERDIVSWTAMITGYGVHGHGKDALALFSQMQQTGIKPNRITFTCVLSACSHAGLVDEGLD

Protein Length: 124

Fln nts: CTCGGTCACAATGGCATGTGTTCTTCCAGCATGTGCCGGATTGGCATTATTGCAACAGGGAAAGGAGATTCATAATTACATAGTTAGAAGTAGTGTTGATAATAGTGTTTCTGTATGGAATGCTCTCATAGATATGTATGCCAAATGCGGTTGTATAAACAATGCACGTAGGGTTTTTGACAAGATGCCTGAAAGAGATATAGTCTCTTGGACTGCAATGATCACAGGTTATGGTGTACATGGCCATGGTAAAGATGCCCTTGCACTGTTTTCCCAAATGCAACAAACAGGCATAAAGCCAAATCGCATTACATTCACCTGTGTCCTGTCGGCTTGCAGTCATGCAGGCCTCGTGGATGAAGGTTTGGATTA

Fln Alignment:

Contig4697___SVTMACVLPACAGLALLQQGKEIHNYIVRSSVDNSVSVWNALIDMYAKCGCINNARRVFDKMPERDIVSWTAMITGYGVHGHGKDALALFSQMQQTGIKPNRITFTCVLSACSHAGLVDEGL
B8LQA8______________SFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain