SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4657

Length: 1203 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene4657

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin-protein ligase, PUB13 n=2 Tax=Selaginella moellendorffii RepID=D8SNN8_SELML	-	-	0.0	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Sma3	E3 ubiquitin ligase PUB14, putative	-	-	7.602e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3	Ligases, Forming carbon-nitrogen bonds, Acid--D-amino-acid ligases (peptide synthases).	EC:6.3.2.-	-	1.194e-13	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Tryptophan metabolism	00380		1.194e-13	%
Sma3	Biosynthesis of siderophore group nonribosomal peptides	01053		1.194e-13	%

Source	Gene names
Sma3	ACRE276; AT4g16490; At1g23030; At1g71020; At2g23140; At2g28830; At3g01400; At3g46510; At3g54790; At3g54850; At4g16490/dl4270c; At5g42340; At5g67340; B1065E10.53; F10G19.3; F12A12.30; F15H11.22; F23N20.1; F28P10.170; F8N16.12; GSVIVT00014430001; GSVIVT0001

Source	GOs	Term	Type	Identity
Sma3	ubiquitin ligase complex	GO:0000151	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3	protein ubiquitination	GO:0016567	Biological Process	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	ThiJ/PfpI	IPR002818	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	Cyclin, C-terminal	IPR004367	-	-
Sma3		IPR006670	-	-
Sma3	Cyclin, N-terminal	IPR006671	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Cyclin-like	IPR013763	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G54850.1	ATPUB14, PUB14 plant U-box 14 chr3:20321524-20323848 FORWARD LENGTH=632	58%
RefSeq	Arabidopsis thaliana	NP_191045.2	U-box domain-containing protein 14 [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002311996.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSB5

Fln msg: your sequence is shorter than subject: 335 - 497

Fln protein: NVLTPNYALRSLISQWCETNGVELPRQLGSSRMTRLSKSSDFSFEEKANIDVLVQNLSCRQVDVQRAAAGELRLLAKRNADNRIFIAEAGAVPPLVKLLSSTDRKTQEHAVTALLNLSIHERNKGLIVQLGAIHPVTELLKHGSMEARENSAATLFSLSVIDENKVKIGASGAISALVDLLRDGTIRGKKDAATALFNLSMCQANKARAIRAGVVPLLLELLVDENTGMVDEALAILSILATHQDGQSALGHQSAIHILVKLICSGSARNKENAAAVLLALCINDSSHLLTGLQFGVYGPLIELSHNGTSRAKRKAKALLELMSEHEQIYISTC*

Protein Length: 336

Fln nts: AATGTGCTAACACCAAATTATGCTCTTCGCAGCTTAATTTCCCAATGGTGTGAGACCAATGGGGTTGAGTTACCAAGACAACTAGGCTCAAGTCGGATGACAAGACTCAGTAAAAGTTCAGATTTTTCTTTTGAAGAAAAAGCAAATATAGATGTTTTGGTTCAAAATCTCTCTTGCCGGCAAGTTGACGTGCAAAGAGCTGCTGCAGGAGAACTTCGATTGCTCGCAAAGAGAAATGCAGATAACAGGATTTTTATTGCAGAGGCTGGAGCTGTACCTCCATTGGTGAAGTTGTTGTCCTCAACTGACAGAAAGACCCAGGAGCATGCCGTTACTGCACTTCTAAACTTGTCTATTCATGAAAGAAATAAGGGTTTGATTGTTCAACTAGGAGCTATCCACCCTGTTACAGAGCTGCTAAAACATGGCAGTATGGAGGCAAGGGAAAATTCTGCAGCAACTCTGTTTAGCTTGTCTGTAATAGATGAGAACAAGGTCAAAATTGGAGCATCAGGAGCTATCTCGGCTTTGGTCGATCTACTTCGTGATGGAACTATAAGAGGGAAAAAGGATGCTGCAACTGCTCTTTTTAATTTGTCTATGTGTCAAGCAAACAAAGCCAGGGCTATCAGAGCTGGGGTTGTGCCACTGCTTTTGGAGTTGCTTGTTGACGAAAACACAGGAATGGTTGATGAAGCTCTTGCAATTCTTTCTATACTCGCTACTCATCAGGATGGTCAAAGTGCTCTTGGACATCAATCAGCCATTCATATTCTTGTCAAGCTCATTTGTTCAGGCTCTGCTCGCAATAAGGAGAATGCTGCTGCTGTATTGCTAGCCTTGTGTATAAATGATTCATCCCATCTATTGACGGGACTGCAATTTGGTGTATATGGGCCTTTGATTGAACTTAGCCATAATGGAACTAGTAGAGCCAAAAGAAAGGCTAAAGCGCTTTTGGAGCTCATGAGCGAGCATGAACAGATTTATATTAGTACCTGCTAA___GAACTATCCTATTTTTATCATAAATCATAAATATGGCACCGTACATTCAAACTTGCCATAAAATCTGAGGGTACATTCTCTCTTGTAGGCAAGGGGAGCAAAGTTACGAAGGGAAAGTAAGTTATGCGTTCAAACCCTATCACAACTTTCTGCTTTCCAAGCCTAGGAGAGCTATGAACCCAAATTCCAAGACTTACC

Fln Alignment:

Contig4657___LTPNYALRSLISQWCETNGVELPRQLGSSRMTRLSKSSDFSFEEKANIDVLVQNLSCRQVDVQRAAAGELRLLAKRNADNRIFIAEAGAVPPLVKLLSSTDRKTQEHAVTALLNLSIHERNKGLIVQLGAIHPVTELLKHGSMEARENSAATLFSLSVIDENKVKIGASGAISALVDLLRDGTIRGKKDAATALFNLSMCQANKARAIRAGXXXXXXXXXXDENTGMVDEALAILSILATHQDGQSALGHQSAIHILVKLICSGSARNKENAAAVLLALCINDSSHLLTGLQFGVYGPLIELSHNGTSRAKRKAKALLELMSEHEQI
C0PSB5______________LTPNYVLRSLIAQWCESHGVEIPSKAGSSR----SDSSDVSFGNRTSIDILVQQLYSRQIDVQRAAAEEIRLLAKRNADNRLLIAEAGAIPQLVKLLSSTDMKTQEHAVTALLNLSIHSSNKGFIVQAGAINRIIDVLKHGSTEARENAAATLFSLSVVDENKVIIGASGAIPPLVDLLRDGTVRGKKDAATAIFNLSIYQGNKFRAVRAGVVPPLIALLVDQSIGMVDEALAILAILATHQEGRIAIGQQSAIDILVELIHSGSARNKENAAAVLLALGMNDSSHLLAAMQLGVFEYLIELAQNGTARARRKARGLLDLISKQEHV

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
159	25		75		0.996473
160	25		75		0.996473
189		57		42	1.0
840		33		66	0.997452
988		16	83		0.994512
1193	40	60			1.0
1194	50	50			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain