SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4650

Length: 125 nt

UniGene Fasta

>sp_v3.0_unigene4650
TATGAGCAGTGCGGGCGATCCTCCAAATAGTAGCTTTGTTTGGATCAAGTACATGGCTTTCCTGTTATCCATTGCGGATGTTGAGAAGGCACGTGCAGTTGCTGAAAGGGCTTTGCAAACACATT

Ace file of the UniGene sp_v3.0_unigene4650

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pre-rRNA processing protein RRP5 n=3 Tax=Arabidopsis thaliana RepID=Q9LHM6_ARATH	-	-	2.0e-08	81%
FL-Next	tr=Pre-rRNA processing protein RRP5; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	81%

Source	Gene names
Sma3	F26K24.26; GSVIVT00025446001; OSJNBa0081K20.26; Os07g0203300; OsI_25303; OsJ_23484; P0431A02.12; PHYPADRAFT_133341; RCOM_0036510;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA processing	GO:0006396	Biological Process	-
Sma3	mRNA processing	GO:0006397	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Proteinase inhibitor I3, Kunitz legume	IPR002160	-	-
Sma3	Ribosomal protein S1, RNA-binding domain	IPR003029	-	-
Sma3	RNA-processing protein, HAT helix	IPR003107	-	-
Sma3	Suppressor of forked	IPR008847	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G11964.1	" RNA binding;RNA binding chr3:3793957-3806626 REVERSE LENGTH=1896"	9.0e-13	81%
RefSeq	Arabidopsis thaliana	NP_187803.4	RNA binding protein [Arabidopsis thaliana]	1.0e-12	81%
RefSeq	Populus trichocarpa	XP_002322744.1	predicted protein, partial [Populus trichocarpa]	8.0e-11	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q9LHM6

Fln msg: Distance to subject end: 219 aas, your sequence is shorter than subject: 41 - 1765

Fln protein: MSSAGDPPNSSFVWIKYMAFLLSIADVEKARAVAERALQTH

Protein Length: 42

Fln nts: TATGAGCAGTGCGGGCGATCCTCCAAATAGTAGCTTTGTTTGGATCAAGTACATGGCTTTCCTGTTATCCATTGCGGATGTTGAGAAGGCACGTGCAGTTGCTGAAAGGGCTTTGCAAACACATT

Fln Alignment:

Contig4650___PNSSFVWIKYMAFLLSIADVEKARAVAERALQT
Q9LHM6______________PNSSFVWIKYMAFMLSLADIEKARSIAERALRT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain