SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4639

Length: 854 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene4639

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	allene oxide synthase [Hevea brasiliensis]	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	58%
Sma3	Allene oxide synthase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydroperoxide dehydratase.	EC:4.2.1.92	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	alpha-Linolenic acid metabolism	00592	%
Sma3	Biosynthesis of plant hormones	01070	%
Sma3	Metabolic pathways	01100	%

Source	Gene names
Sma3	13-hpl; AOS; AOS1; AOS2; AOS3; AOS4; AT4g15440; At4g15440; At5g42650; CYP74; CYP74A; CYP74A1; CYP74A2; CYP74A3; CYP74A4; CYP74A7; CYP74B7; CYP74C6v1-1; CYP74C6v1-2; CYP74C7-1; CYP74C7-2; CYP74C8; GSVIVT00014710001; GSVIVT00025918001; GSVIVT00036454001; GS

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	plastoglobule	GO:0010287	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	allene oxide synthase activity	GO:0009978	Molecular Function	-
Sma3	lyase activity	GO:0016829	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	hydroperoxide dehydratase activity	GO:0047987	Molecular Function	-
Sma3	response to fungus	GO:0009620	Biological Process	-
Sma3	jasmonic acid biosynthetic process	GO:0009695	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	oxylipin biosynthetic process	GO:0031408	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, E-class, group IV	IPR002403	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G42650.1	AOS, CYP74A, DDE2 allene oxide synthase chr5:17097803-17099359 REVERSE LENGTH=518	49%
RefSeq	Arabidopsis thaliana	NP_199079.1	allene oxide synthase [Arabidopsis thaliana]	49%
RefSeq	Populus trichocarpa	XP_002302453.1	cytochrome P450 allene oxide synthase [Populus trichocarpa]	46%

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
221	20		80		0.995493
222			80	20	0.995493
224			80	20	0.995493
307	16		83		0.994512
311			83	16	0.994512
427		12		87	0.992554
459	12		87		0.992554
462		87		12	0.992554
463	87			12	0.992554
488	12		87		0.992554
489		12		87	0.992554
492			85	14	0.993533
586	25		75		0.996473
587		25	75		0.996473
589	75			25	0.996473
590			75	25	0.996473
733			16	16	0.988813
740		83		16	0.994512
783	75		25		0.996473
792	33			66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain