SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4632

Length: 1161 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene4632

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	E3 ubiquitin-protein ligase KEG [Arabidopsis thaliana] sp\|Q9FY48.2\|KEG_ARATH RecName: Full=E3 ubiquitin-protein ligase KEG; AltName: Full=Protein KEEP ON GOING; AltName: Full=RING finger protein KEG gb\|ABC46683.1\| RING E3 ligase protein [Arabidopsis thali	-	-	0.0	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	27%

Source	Gene names
Sma3	At5g13530; GSVIVT00030895001; KEG; OsI_19839; OsJ_18429; POPTRDRAFT_641445; RCOM_1452000; T6I14.60; VITISV_007720;

Source	GOs	Term	Type	Identity
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G13530.1	" KEG protein kinases;ubiquitin-protein ligases chr5:4345618-4354369 FORWARD LENGTH=1625"	0.0	70%
RefSeq	Arabidopsis thaliana	NP_196857.2	E3 ubiquitin-protein ligase KEG [Arabidopsis thaliana]	0.0	70%
RefSeq	Populus trichocarpa	XP_002298465.1	predicted protein, partial [Populus trichocarpa]	2.0e-34	61%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRK6

Fln msg: Distance to subject end: 77 aas, atg_distance in limit (1-15): atg_distance = 11, W2: There is no M at the beginning, your sequence is shorter than subject: 387 - 460

Fln protein: NVYPEADVEVLDKDGDPPIVFALAAGTPDCLKTLIKRGANVNAKLKEGLGPSVAHVCAFHGQPDCMRELLLAGADPNAIDDEGETVLHRAVGKKHTDCAVVILENGGCKSMGILNSKEMTPLHMCIATWNVAVVKRWVEVATKEEIDDAIEIPSKIGTALCMAGALKKAHETECRELVRILITSGADPKAQDALRGQTALHAAAMANDVEMVKIILDAGVDVDIRDVHNTTPLHVALARGSKSCVGLLLESGANCNLQNDEGDNAFHIAADTAKMVRENLDWIVVMLQQEDAAIDVRNHSGKTLKDFIEALPREWISEDLMDALSVKGIQLSLTIFEIGDWVKFKKSVKVPKYGWQGAKHRSVGFVQSVPDKEHLIVSFCSGEAHVL

Protein Length: 388

Fln nts: A_-_ATGTGTATCCTGAAGCAGATGTGGAGGTTCTGGACAAGGATGGAGACCCCCCAATTGTATTTGCACTGGCCGCTGGAACACCTGACTGTTTAAAAACCCTGATAAAGAGAGGAGCAAATGTGAATGCAAAGCTAAAAGAGGGCTTGGGCCCTTCTGTTGCTCATGTTTGTGCATTTCATGGCCAACCTGACTGCATGCGGGAGCTCTTGTTGGCAGGGGCTGATCCTAACGCCATAGATGATGAGGGTGAGACTGTTCTACACAGAGCTGTTGGAAAGAAGCACACAGATTGTGCAGTTGTGATATTGGAAAATGGAGGATGCAAATCAATGGGCATTTTGAATTCGAAGGAAATGACTCCTTTGCACATGTGCATAGCGACATGGAATGTGGCTGTGGTTAAAAGGTGGGTCGAGGTAGCAACGAAAGAAGAGATCGATGATGCAATTGAAATTCCAAGTAAAATTGGGACTGCATTATGTATGGCGGGTGCACTGAAGAAAGCTCATGAAACAGAATGCAGAGAATTGGTCAGAATTTTGATTACTTCAGGGGCAGATCCAAAAGCCCAAGATGCACTGCGAGGACAAACTGCTCTACATGCAGCAGCAATGGCTAATGATGTGGAAATGGTGAAGATCATCTTGGATGCAGGTGTTGATGTTGATATTAGAGATGTACACAATACAACACCTCTTCATGTTGCTTTAGCTAGGGGTTCAAAGTCATGTGTAGGCCTGCTTTTAGAAAGTGGGGCAAATTGCAACTTACAGAATGACGAGGGGGACAATGCATTCCATATAGCTGCAGACACAGCAAAGATGGTTCGAGAAAATCTTGACTGGATAGTTGTCATGCTGCAGCAGGAGGATGCGGCTATTGATGTTCGAAACCATAGTGGTAAGACATTAAAGGACTTTATAGAGGCACTTCCTCGAGAATGGATCTCTGAAGACCTGATGGACGCACTTTCAGTGAAGGGCATACAACTGTCACTGACAATATTTGAAATAGGAGATTGGGTTAAGTTCAAGAAGAGTGTTAAGGTCCCAAAGTATGGATGGCAAGGTGCAAAGCACAGAAGCGTAGGTTTTGTTCAGAGTGTACCTGATAAGGAGCATCTAATTGTATCATTTTGTTCTGGAGAAGCCCATGTATTG

Fln Alignment:

Contig4632___ANVNAKLKEGLGPSVAHVCAFHGQPDCMRELLL-AGADPNAIDDEGETVLHRAVGKKHTDCAVVILENGGCKSMGILNSKEMTPLHMCIATWNVAVVKRWVEVATKEEIDDAIEIPSKIGTALCMAGALKKAHETECRELVRILITSGADPKAQDALRGQTALHAAAMANDVEMVKIILDAGVDVDIRDVHNTTPLHVALARGSKSCVGLLLESGANCNLQNDEGDNAFHIAA
C0PRK6______________AETIAAVKDANGRGALHFAARDGRTEICKYLLEDLNLCVDSRDDDGETPLIHATRQGHLQTAKYLLEHGADPAT-TSNELGTTALHHAAGTGSVELINLLLSKGVP------VDAPSDAGPPLIWASGNDRP------TAVKTLLDHGADPNAETD-DNVTALISAVAASSLESVELLVKRGAKVNV-NAGGVTPLHIAADNGNEKMISCLLEAGADPNTRDEEDLKPLQVAA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain