SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4626

Length: 468 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene4626
CATCAACAAGACATTGTCTCCTGGACAACAATGATTGCAGGATATGCCATGCATGGATTTGCCAACGAGGCGCTGATGCTTTTTGAACAAATGAAACATACTAGCGTGGTACCAGACCATGTCACCTTACTTTGTGTTTTGGCTGCCTGCAGCCATGCGGGTTTCGTGAACGAGGGCTGTCATTACTTCCATTGCATGAATGAATACTATATCACACCTACAATGGACCACTACAACTGCATGGTTGATCTTCTTGGCCGTGCTGGGCTCCTGGATGAAGCAAATGACTTTATCAACAAAATGCCAATAAAACCAGATGCAACTGTGTGGAGATGTTTTCTTGGTGCCTGTAGAACCCATATTAATGTAGAGCTAGGAGAGTATGGGGCAGAGCGTCTTATTGAGTTGGACCCTGATAATGCTTCACCATATGTGCTTCTATCAAACATCTATGCTGCAGCTGACATT

Ace file of the UniGene sp_v3.0_unigene4626 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9SIT7.1\|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600 gb\|AAD22682.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEC06244.1\| pentatricopeptide repe	-	-	2.8026e-45	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Sma3	Pentatricopeptide, putative, expressed	-	-	2.777e-12	-

Source	Gene names
Sma3	At1g56690; At1g74630; At2g01510; At2g03880; At2g13600; At2g22070; At3g09040; At3g12770; At3g24000; At3g49170; At4g02750; At4g13650; At4g16835; At4g18750; At4g19191; At5g13270; At5g40410; B1032F05.19; DYW10; EMB2261; F14O13.19; F18A5.40; F1M20.31; F25P12.8

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	diacylglycerol kinase activity	GO:0004143	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	deaminase activity	GO:0019239	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway	GO:0007205	Biological Process	-
Sma3	purine ribonucleoside monophosphate biosynthetic process	GO:0009168	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	phloem or xylem histogenesis	GO:0010087	Biological Process	-
Sma3	leaf vascular tissue pattern formation	GO:0010305	Biological Process	-
Sma3	cotyledon vascular tissue pattern formation	GO:0010588	Biological Process	-
Sma3	leaf development	GO:0048366	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribonuclease P	IPR000100	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Diacylglycerol kinase, accessory domain	IPR000756	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Diacylglycerol kinase, catalytic domain	IPR001206	-	-
Sma3	Adenosine/AMP deaminase domain	IPR001365	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Domain of unknown function DUF221	IPR003864	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR011523	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G13600.1	Pentatricopeptide repeat (PPR) superfamily protein chr2:5671493-5673586 FORWARD LENGTH=697	53%
RefSeq	Arabidopsis thaliana	NP_178983.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002328140.1	predicted protein, partial [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADG9

Fln msg: Distance to subject end: 154 aas, atg_distance in limit (1-15): atg_distance = 2, your sequence is shorter than subject: 146 - 312

Fln protein: MIAGYAMHGFANEALMLFEQMKHTSVVPDHVTLLCVLAACSHAGFVNEGCHYFHCMNEYYITPTMDHYNCMVDLLGRAGLLDEANDFINKMPIKPDATVWRCFLGACRTHINVELGEYGAERLIELDPDNASPYVLLSNIYAAADI

Protein Length: 147

Fln nts: CATCAACAAGACATTGTCTCCTGGACAACA_-_ATGATTGCAGGATATGCCATGCATGGATTTGCCAACGAGGCGCTGATGCTTTTTGAACAAATGAAACATACTAGCGTGGTACCAGACCATGTCACCTTACTTTGTGTTTTGGCTGCCTGCAGCCATGCGGGTTTCGTGAACGAGGGCTGTCATTACTTCCATTGCATGAATGAATACTATATCACACCTACAATGGACCACTACAACTGCATGGTTGATCTTCTTGGCCGTGCTGGGCTCCTGGATGAAGCAAATGACTTTATCAACAAAATGCCAATAAAACCAGATGCAACTGTGTGGAGATGTTTTCTTGGTGCCTGTAGAACCCATATTAATGTAGAGCTAGGAGAGTATGGGGCAGAGCGTCTTATTGAGTTGGACCCTGATAATGCTTCACCATATGTGCTTCTATCAAACATCTATGCTGCAGCTGACATT

Fln Alignment:

Contig4626___QDIVSWTTMIAGYAMHGFANEALMLFEQMKHTSVVPDHVTLLCVLAACSHAGFVNEGCHYFHCMN-EYYITPTMDHYNCMVDLLGRAGLLDEANDFINKMPIKPDATVWRCFLGACRTHINVELGEYGAERLIELDPDNASPYVLLSNIYAAA
D5ADG9______________KNVVSWNAMIVGYGMHGHGEDALVLFTQMQQRGVKPNEITFISVLSACSHAGLVDEGWKCYNCMTLDYAITPTVEHYACMVDLLGRAGHLNEAWDFIEKMPIEPGASVWGAFLGSCRIHCNIELGERVAELLLNLDPDNAGYYVLLSNIYAAA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain