SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4600

Length: 1701 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene4600

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Isoflavone reductase-like protein (Fragment) n=3 Tax=Picea sitchensis RepID=E0ZIN1_PICSI	-	-	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	transcription repressor activity	GO:0016564	Molecular Function	-
Sma3	regulation of nitrogen utilization	GO:0006808	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	NAD(P)-binding domain	IPR016040	-	0.0	-
Sma3	NmrA-like	IPR008030	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002322036.1	leucoanthocyanidin reductase [Populus trichocarpa]	0.0	56%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMU8

Fln msg:

Fln protein: MAVCGTEVAHTVLYVAADMVENNTSIVTTSMAAANCEMEKPHPNSSATSRILVIGATGYIGRFVAQEAVAAGHPTYALIRPFAASDLAKAQRVQHLKDAGVHILYGSLSDHNLLVNTLKDMDVVISTMGGREIGEQLKIVDAIKEVGTVKRFLPSEFGHDIDKAEPVEPGLTFYKEKRKIRRAVEAANIPFTYICCNSIAGWPYFYHTHPSELPPPTEQFEIYGDGNVKAYFVTGSDIGKYTIKTVDDLRTVNKTVHFRPPKNFLTLNELAAIWEKKIGRTLPKVCISEQDLLAIARANYLPASIVASLTHDIFINGCQYKFEIDGHHDLEACELYAEESYTTVNDFFNEYL*

Protein Length: 354

Fln nts: ATGGGGGAACAAGCTAAGCAAGATAGGTTTTATTCTTCTGGAGTTGGGTGAGGCTTGGAAATCTGAGTAAAAAGGGTGCACAGCAATTAAGAAGTTGCAGCC_-_ATGGCGGTCTGTGGAACTGAAGTAGCTCATACTGTGCTCTATGTAGCTGCAGACATGGTGGAAAACAACACGTCTATTGTGACCACCTCTATGGCTGCAGCAAATTGTGAGATGGAGAAGCCTCATCCAAATTCCTCTGCCACCTCAAGAATACTGGTGATTGGAGCCACAGGTTACATTGGCCGTTTTGTTGCCCAAGAAGCTGTGGCTGCTGGTCATCCTACCTATGCTCTTATACGCCCGTTTGCTGCTTCTGACCTGGCCAAAGCACAGCGCGTCCAACACTTGAAGGATGCCGGGGTCCATATTCTTTATGGGTCTTTGAGTGACCACAACCTCTTAGTAAATACATTGAAGGACATGGACGTTGTTATCTCTACCATGGGAGGCCGAGAAATTGGAGAGCAGCTCAAGATTGTGGACGCTATTAAGGAAGTTGGAACAGTTAAGAGGTTTCTCCCTTCGGAATTCGGGCATGACATCGACAAAGCTGAGCCAGTGGAGCCTGGACTGACCTTCTACAAGGAGAAGAGAAAGATTAGGCGAGCTGTGGAGGCTGCCAACATCCCTTTCACTTACATCTGCTGCAACTCAATAGCTGGTTGGCCTTATTTTTATCACACTCATCCCTCTGAGCTTCCTCCTCCAACAGAACAGTTCGAAATCTATGGCGATGGGAACGTCAAAGCTTACTTCGTGACTGGATCTGACATTGGCAAGTACACCATCAAGACTGTGGACGATCTTAGAACTGTAAACAAAACTGTTCACTTCAGGCCCCCAAAGAATTTTCTTACGCTAAACGAGCTCGCTGCCATATGGGAGAAGAAGATTGGCAGGACCCTGCCCAAGGTCTGCATATCTGAACAAGATTTGTTGGCAATAGCCAGAGCCAACTACTTACCGGCGAGCATTGTAGCTTCTCTCACCCATGACATCTTCATCAATGGATGCCAATACAAATTCGAAATCGATGGACATCACGATCTGGAGGCCTGCGAACTTTATGCCGAAGAATCGTACACCACTGTGAATGACTTTTTCAATGAATATCTGTGA___AGACGCATGCATTAATGTCGTATGGATGCAGGGAAAAGCCCTCCGATCCCAGATTTCGCATCCAATTTGCTATAGAAATGTTTGTATTCTTTTTCAGAAGAATAGAAATGTTTGTATTCTACCGTATTGTTTTCTTCTTACCTGTCACCCATCCATAACCATATGAGCATCGCGTCGTTTTCCTGCCTTTCACATCCAAACCCTAGCAAAGTTTTCAGAAAAATGAACCTGGCCACGTGGTCGACCACAATAAGATAAAGGTATGTTAGGATAAGATAGCCCCATTTCAGCTCTGTCTGTTACATCACATTGAAGTTAATTGTTAGGAAACCCAAGGGCAGCCATTCATAAGGCCCGAACTAGCTGTAGCTCTGCATCTGCTTATTGAAATCTGCAGCGAATGCATTTATTTATTATTATTGTATGATTATTGACCAAATGGTCGTTGATATGGACGCTCAAAGCATTTTCAACCGTTCACGGAGTTCTCGAGAAGACATCTGCTTCACGTCTGAAAATTCAGCCATGAATTATTTATTT

Fln Alignment:

Contig4600___MAVCGTEVAHTVLYVAADMVENNTSIVTTSMAAANCEMEKPHPNSSATSRILVIGATGYIGRFVAQEAVAAGHPTYALIRPFAASDLAKAQRVQHLKDAGVHILYGSLSDHNLLVNTLKDMDVVISTMGGREIGEQLKIVDAIKEVGTVKRFLPSEFGHDIDKAEPVEPGLTFYKEKRKIRRAVEAANIPFTYICCNSIAGWPYFYHTHPSELPPPTEQFEIYGDGNVKAYFVTGSDIGKYTIKTVDDLRTVNKTVHFRPPKNFLTLNELAAIWEKKIGRTLPKVCISEQDLLAIARANYLPASIVASLTHDIFINGCQYKFEIDGHHDLEACELYAEESYTTVNDFFNEYL
A9NMU8______________MAVCGTEVAHTVLYVAADMVENNTSIVTTSMAATNREMEKPLLNSSATSRILVIGATGYIGRFVAQEAVAAGHPTYALIRPFTASDQAKAQRVQELKDSGVHILYGCLSDHNSLVNTMKDMDVVISTMGGREITEQLMIVDAIKEVGTVKRFLPSEFGHDIDKAEPVEPGLTFYNEKRKIRRAVEAANIPFTYICCNSIAGWPYFYHTHPSELPPPTEQFEIYGDGNVKAYFVTGSDIGKYTIKTVDDIRTVNKTVHFRPPKNFLTLNELAAIWEKKISKTLPRVCISEQDLLAIAKANYLPESIVASLTHDIFIHGCQYKFEIDGHHDLEVCELYPEESYTAVDEFFDEYL

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
101		85		14	0.993533
153	87		12		0.992554
1656	85		14		0.993533
1658	71		28		1.0
1675	14		14		0.984337
1676	14		85		0.993533
1683	14	14			0.984337
1684	14	85			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain