SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4585

Length: 333 nt

UniGene Fasta

>sp_v3.0_unigene4585
ATAGACCATCGCGGGGTTGAAGTGAAGAAAACCTTCGCCAGATCTCTGTATCTTCGCCTCAGAGAGAAAGGATTGACGGCTTTTGTCGATGACGAGGAGATGCAAGTGGGATACGAAATTTCTTCTCAGTTAGAGCACGTTATTAGAACCGCCTCCGTTCATGTGGCGATCCTTTCTCCTAGATATGCTGAGTCATATTGGTGCCTGAACGAGCTCGTAAAGATGTTACAGTCAAAAGCTCCTGTAATACCAGTCTTTTACCGTGTCAGCCCCGCTGACGTCCGGTGGGTGCGGGGCTCCTATGGTGAAGCCCTAGAATCTCTTGAGAAGAAG

Ace file of the UniGene sp_v3.0_unigene4585

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TIR/P-loop/LRR n=1 Tax=Pinus taeda RepID=Q8L8J0_PINTA	-	-	9.0e-39	72%
FL-Next	tr=TIR/P-loop/LRR; Pinus taeda (Loblolly pine).	-	-	0.0	72%
Sma3	Putative TIR/NBS/LRR disease resistance protein	-	-	2.274e-09	-

Source	GOs	Term	Type	Identity
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q8L8J0

Fln msg: Distance to subject end: 222 aas, atg_distance in limit (1-15): atg_distance = 16, W2: There is no M at the beginning, your sequence is shorter than subject: 111 - 348

Fln protein: IDHRGVEVKKTFARSLYLRLREKGLTAFVDDEEMQVGYEISSQLEHVIRTASVHVAILSPRYAESYWCLNELVKMLQSKAPVIPVFYRVSPADVRWVRGSYGEALESLEKK

Protein Length: 112

Fln nts: ATAGACCATCGCGGGGTTGAAGTGAAGAAAACCTTCGCCAGATCTCTGTATCTTCGCCTCAGAGAGAAAGGATTGACGGCTTTTGTCGATGACGAGGAGATGCAAGTGGGATACGAAATTTCTTCTCAGTTAGAGCACGTTATTAGAACCGCCTCCGTTCATGTGGCGATCCTTTCTCCTAGATATGCTGAGTCATATTGGTGCCTGAACGAGCTCGTAAAGATGTTACAGTCAAAAGCTCCTGTAATACCAGTCTTTTACCGTGTCAGCCCCGCTGACGTCCGGTGGGTGCGGGGCTCCTATGGTGAAGCCCTAGAATCTCTTGAGAAGAAG

Fln Alignment:

Contig4585___IDHRGVEVKKTFARSLYLRLREKGLTAFVDDEEMQVGYEISSQLEHVIRTASVHVAILSPRYAESYWCLNELVKMLQSKAPVIPVFYRVSPADVRWVRGSYGEALESLEKK
Q8L8J0______________INHRGVDVKKTFVRSLYRRLREKGLTAFFNEEEMQGGCEISSQLADAIRTASVHVAIFSPRYVESEWCLNELLLMLKSNGPIVPVFYRVKPQDVRWMLGLYGEALATHEMK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain