SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4581

Length: 464 nt

UniGene Fasta

>sp_v3.0_unigene4581
AGTGGGAGGCTTTACCAGACCATTTGTTTGCATAGACTCGTTGGGTGCTTACTGAAAGATAGTTAGCAGGAGGCTGGTGAAAACTTTACTAGGCAATGCTGATCAATATGGTGCCCAATGTACTGTTATTTCTCTTGGTAGCTGCAATGGCTGCCACTGCTACCTCACCTCCGAAGCCTGTGGATGTCCCATTCCAAAAAAACTATGTACCCACCTGGGCTTCTGATCATATCAAGCACATTAATGGGGGGAACAAGTGCAGCTTTCTCTTGACAAATGGACAGGTACTGGCTTCGAATCCAAGGGTAGCTACTTGTTTGGACATTTCAGTATGCAGATAAAGATGGTTCCTGGTGACTCTGCAGGCGTTGTGACTGCCTTTTATTATCCTCTCAGAACTCTGAACATGATGAAATAGACTTTGAGTTCTTGGGCAATAGGTCTGGACAACCTTACATTCTACC

Ace file of the UniGene sp_v3.0_unigene4581

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Xyloglucan endotransglycosylase n=1 Tax=Annona cherimola RepID=B8XXI4_ANNCH	-	-	6.0e-37	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Sma3	Xyloglucan endotransglycosylase	-	-	9.775e-22	-

Source	ECs	Term	Type	e value	Identity
Sma3	Xyloglucan:xyloglucosyl transferase.	EC:2.4.1.207	-	1.208e-33	-

Source	Gene names
Sma3	At2g06850; At5g13870; At5g65730; EXGT; EXGT-A1; EXGT-A4; EXGT-N2; EXT; GSVIVT00006236001; GSVIVT00031399001; LOC_Os11g33270; MtrDRAFT_AC157890g25v2; MtrDRAFT_AC157890g26v2; MtrDRAFT_AC157890g27v2; Os11g0539200; OsI_36383; OsJ_34148; PC-XET1; POPTRDRAFT_57

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	xyloglucan:xyloglucosyl transferase activity	GO:0016762	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	cellular glucan metabolic process	GO:0006073	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	response to mechanical stimulus	GO:0009612	Biological Process	-
Sma3	response to low light intensity stimulus	GO:0009645	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	unidimensional cell growth	GO:0009826	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Beta-glucanase	IPR008264	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G13870.1	EXGT-A4, XTH5 xyloglucan endotransglucosylase/hydrolase 5 chr5:4475089-4476217 REVERSE LENGTH=293	7.0e-35	80%
RefSeq	Arabidopsis thaliana	NP_196891.1	xyloglucan:xyloglucosyl transferase [Arabidopsis thaliana]	9.0e-35	80%
RefSeq	Populus trichocarpa	XP_002304625.1	predicted protein [Populus trichocarpa]	2.0e-37	80%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZ22

Fln msg: Overlapping hits, possible frame ERROR between 272 and 248, and possible frame ERROR between 385 and 388, Distance to subject end: 170 aas, your sequence is shorter than subject: 123 - 294

Fln protein: MLINMVPNVLLFLLVAAMAATATSPPKPVDVPFQKNYVPTWASDHIKHINxxxxxxxxxxKWTGTGFESKGSYLFGHFSMQIKMVPGDSAGVVTAFxxSSQNSEHDEIDFEFLGNRSGQPYIL

Protein Length: 124

Fln nts: AGTGGGAGGCTTTACCAGACCATTTGTTTGCATAGACTCGTTGGGTGCTTACTGAAAGATAGTTAGCAGGAGGCTGGTGAAAACTTTACTAGGCA_-_ATGCTGATCAATATGGTGCCCAATGTACTGTTATTTCTCTTGGTAGCTGCAATGGCTGCCACTGCTACCTCACCTCCGAAGCCTGTGGATGTCCCATTCCAAAAAAACTATGTACCCACCTGGGCTTCTGATCATATCAAGCACATTAATxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAAATGGACAGGTACTGGCTTCGAATCCAAGGGTAGCTACTTGTTTGGACATTTCAGTATGCAGATAAAGATGGTTCCTGGTGACTCTGCAGGCGTTGTGACTGCCTTTTxxxTATCCTCTCAGAACTCTGAACATGATGAAATAGACTTTGAGTTCTTGGGCAATAGGTCTGGACAACCTTACATTCTACC

Fln Alignment:

Contig4581___MLINMVPNXXXXXXXXXXXXXXXSPPKPVDVPFQKNYVPTWASDHIKHINGxxxxxxxxDKWTGTGFESKGSYLFGHFSMQIKMVPGDSAGVVTAFYxSSQNSEHDEIDFEFLGNRSGQPYIL
A9NZ22______________MLIKMVPSVLLVLLVAAMAAMAASPPKPVDVPFQKNYVPTWASDHIKNINGxxxxxxxxDKWTGTGFQSKGSYLFGHFSMQIKMVPGDSAGVVTAFYxSSQNAEHDEIDFEFLGNRSGQPYIL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain