SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4560

Length: 1951 nt

UniGene Fasta

>sp_v3.0_unigene4560
ATGGGGAAGAACATCTTAACAAGTTCCCCTTGAATACACCATATATGGAATTTGAACACAAACTACAAGAAATGGGATTGGAAAAAGGATGGGGAGACAATGTAGAACATGTGTTGGATATGATTCGTTTGCTCTTGGAGATCCTTCAGGCACCTGATCCATCGACCTTAGAAACGTTTCTAGGAAGGATTCCTATGGTCTTCAATGTTGTGATTCTTTCACCTCATGGTTATTTTGGGCAAGCGAATGTTTTAGGAATGCCAGATACTGGTGGACAGGTTGTGTATATACTCGATCAAGTTCGTGCCTTGGAAAAGGAAATGCTGCTGAGAATAAAACGACAGGGATTGGACATTACACCTCAGATTGTTGTGGTAACTCGGCTGATTCCTGAGGCCTATGGCACAACATGCAATCAACGAATTGAAAGAATTAGTGGAACACAACATTCACGGATACTCCGTGTGCCCTTCAAAACAGACAAAGGAGTTTTGCGCAAGTGGGTTTCTCGATTTGATGTGTGGCCTTACTTGGAAAGATTTTCAGAGGATGTATCAAATGAAATAAATGCGGAGCTACAAGGTCAAGCTGATCTCATCATTGGCAATTACAGTGATGGAAATTTAGTCGCATCTTTGATTGCAAATAAACAAGGAATCACTCAGTGCAACATAGCCCATGCTTTGGAGAAGACCAAATACCCAGATTCAGACTTATATTGGAAGAATTTTGAAGAAAAATACCATTTTTCTTGCCAATTTACTGCAGATATAATGGCAATGAATCATGCAGATTTCATTATCACTAGCACATATCAAGAGATTGCAGGAAGCAAAGATACCGTTGGACAGTATGAAAGCCACACTGCTTTCACCCTTCCCGGTCACTACCGTGTGGTTAATGGAATTGATGTTTTTGATCCCAAATTCAACATTGTTTCTCCTGGAGCAGACATGCAGATTTATTTCCCTTATACAGAAAAGCAGCATCGCCTTACTACTTTACATGGTACAATTGAGGAACTCTTGTTCAGTCCCGAACAGACAGCTGAACATATGTGTGTCTTGAATGACCGTAAAAAACCCATTATCTTCTCTATGGCAAGACTCGATCGGGTGAAAAATATGACAGGACTGGTTGAATGGTTTGCAAAGAACAAACGCTTGAGGGAGCTGGTTAACCTTGTTGTGGTTGCTGGTGATATCGACCCATCAAAGTCCAAAGACAGAGAAGAAGTGGCTGAAATTGAAAAAATGCATAGACTTATCAAAGAGTATAACCTGAATGGTCAGTTTCGATGGATATGTGCACAAAAAAATAGGGTGCGGAACGGTGAACTGTACCGTTACATCTGTGATACAAGGGGTGCCTTTGTACAGCCTGCACTTTATGAAGCTTTTGGACTTACTGTTGTTGAGGCAATGACATGTGGTCTTCCTACATTTGCAACATGTAATGGAGGTCCTGCTGAAATTATTGTGGATGGGGTGTCTGGATTTCATATTGATCCCTACCATGGGGATTATGCAAGTGAATGCATTGCGGACTTTTTTGAGAGGTGCAAGACAGATCCCGGTTACTGGGACAATATCTCCAATGCTGGTTTACAGCGTATCTATGAAAAGTATACATGGAAGATTTATTCTGAGAAATTAATGACGCTTGCTGGAGTTTATGGCTTTTGGAAATATGTATCAAAACTGGAAAGACGTGAGACACGCCGCTATCTAGAGATGTTTTACACCTTAAAGTACAAAGACCTGGTTAAAACTGTGCCATTAGCTGTTGAAGAAATCGCTGATGGGACTGAAGAGAAGAGTACAGCATAGCCTACAGTGGTACTGCCAGTTACATCATGATTCATCTGTGTAACTTTCTGTTTCCATTTGTGTATGGAATACACAGAAATCTCCAGATTGCATTATTGTTTTTTAGTAATCACAGCTGTTTC

Ace file of the UniGene sp_v3.0_unigene4560

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Sucrose synthase n=1 Tax=Pinus taeda RepID=A6N837_PINTA	-	-	87%
FL-Next	tr=Sucrose synthase; Pinus taeda (Loblolly pine).	-	-	87%
Sma3	Sucrose synthase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Sucrose synthase.	EC:2.4.1.13	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		0.0	%
Sma3	Metabolic pathways	01100		0.0	%

Source	Gene names
Sma3	At1g73370; At3g43190; At4g02280; At5g20830; At5g49190; B1056G08.118; BoSS; CSS1; CitSS2; CitSUS1; CitSUS1-2; CitSUSA; CitSUSA-2; F7K15_40; FaSS; GSVIVT00000882001; GSVIVT00003157001; GSVIVT00016378001; GSVIVT00023450001; GSVIVT00026116001; GSVIVT000280360

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	sucrose synthase activity	GO:0016157	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	sucrose-phosphate synthase activity	GO:0046524	Molecular Function	-
Sma3	response to hypoxia	GO:0001666	Biological Process	-
Sma3	sucrose metabolic process	GO:0005985	Biological Process	-
Sma3	response to osmotic stress	GO:0006970	Biological Process	-
Sma3	biosynthetic process	GO:0009058	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to flooding	GO:0009413	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Sucrose synthase	IPR000368	-	-
Sma3	Glycosyl transferase, family 1	IPR001296	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Sucrose synthase, plant/cyanobacteria	IPR012820	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G02280.1	SUS3, ATSUS3 sucrose synthase 3 chr4:995166-998719 FORWARD LENGTH=809	75%
RefSeq	Arabidopsis thaliana	NP_192137.1	sucrose synthase 3 [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002302727.1	predicted protein [Populus trichocarpa]	76%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A6N837

Fln msg: your sequence is shorter than subject: 609 - 833

Fln protein: GEEHLNKFPLNTPYMEFEHKLQEMGLEKGWGDNVEHVLDMIRLLLEILQAPDPSTLETFLGRIPMVFNVVILSPHGYFGQANVLGMPDTGGQVVYILDQVRALEKEMLLRIKRQGLDITPQIVVVTRLIPEAYGTTCNQRIERISGTQHSRILRVPFKTDKGVLRKWVSRFDVWPYLERFSEDVSNEINAELQGQADLIIGNYSDGNLVASLIANKQGITQCNIAHALEKTKYPDSDLYWKNFEEKYHFSCQFTADIMAMNHADFIITSTYQEIAGSKDTVGQYESHTAFTLPGHYRVVNGIDVFDPKFNIVSPGADMQIYFPYTEKQHRLTTLHGTIEELLFSPEQTAEHMCVLNDRKKPIIFSMARLDRVKNMTGLVEWFAKNKRLRELVNLVVVAGDIDPSKSKDREEVAEIEKMHRLIKEYNLNGQFRWICAQKNRVRNGELYRYICDTRGAFVQPALYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVDGVSGFHIDPYHGDYASECIADFFERCKTDPGYWDNISNAGLQRIYEKYTWKIYSEKLMTLAGVYGFWKYVSKLERRETRRYLEMFYTLKYKDLVKTVPLAVEEIADGTEEKSTA*

Protein Length: 610

Fln nts: ATGGGGAAGAACATCTTAACAAGTTCCCCTTGAATACACCATATATGGAATTTGAACACAAACTACAAGAAATGGGATTGGAAAAAGGATGGGGAGACAATGTAGAACATGTGTTGGATATGATTCGTTTGCTCTTGGAGATCCTTCAGGCACCTGATCCATCGACCTTAGAAACGTTTCTAGGAAGGATTCCTATGGTCTTCAATGTTGTGATTCTTTCACCTCATGGTTATTTTGGGCAAGCGAATGTTTTAGGAATGCCAGATACTGGTGGACAGGTTGTGTATATACTCGATCAAGTTCGTGCCTTGGAAAAGGAAATGCTGCTGAGAATAAAACGACAGGGATTGGACATTACACCTCAGATTGTTGTGGTAACTCGGCTGATTCCTGAGGCCTATGGCACAACATGCAATCAACGAATTGAAAGAATTAGTGGAACACAACATTCACGGATACTCCGTGTGCCCTTCAAAACAGACAAAGGAGTTTTGCGCAAGTGGGTTTCTCGATTTGATGTGTGGCCTTACTTGGAAAGATTTTCAGAGGATGTATCAAATGAAATAAATGCGGAGCTACAAGGTCAAGCTGATCTCATCATTGGCAATTACAGTGATGGAAATTTAGTCGCATCTTTGATTGCAAATAAACAAGGAATCACTCAGTGCAACATAGCCCATGCTTTGGAGAAGACCAAATACCCAGATTCAGACTTATATTGGAAGAATTTTGAAGAAAAATACCATTTTTCTTGCCAATTTACTGCAGATATAATGGCAATGAATCATGCAGATTTCATTATCACTAGCACATATCAAGAGATTGCAGGAAGCAAAGATACCGTTGGACAGTATGAAAGCCACACTGCTTTCACCCTTCCCGGTCACTACCGTGTGGTTAATGGAATTGATGTTTTTGATCCCAAATTCAACATTGTTTCTCCTGGAGCAGACATGCAGATTTATTTCCCTTATACAGAAAAGCAGCATCGCCTTACTACTTTACATGGTACAATTGAGGAACTCTTGTTCAGTCCCGAACAGACAGCTGAACATATGTGTGTCTTGAATGACCGTAAAAAACCCATTATCTTCTCTATGGCAAGACTCGATCGGGTGAAAAATATGACAGGACTGGTTGAATGGTTTGCAAAGAACAAACGCTTGAGGGAGCTGGTTAACCTTGTTGTGGTTGCTGGTGATATCGACCCATCAAAGTCCAAAGACAGAGAAGAAGTGGCTGAAATTGAAAAAATGCATAGACTTATCAAAGAGTATAACCTGAATGGTCAGTTTCGATGGATATGTGCACAAAAAAATAGGGTGCGGAACGGTGAACTGTACCGTTACATCTGTGATACAAGGGGTGCCTTTGTACAGCCTGCACTTTATGAAGCTTTTGGACTTACTGTTGTTGAGGCAATGACATGTGGTCTTCCTACATTTGCAACATGTAATGGAGGTCCTGCTGAAATTATTGTGGATGGGGTGTCTGGATTTCATATTGATCCCTACCATGGGGATTATGCAAGTGAATGCATTGCGGACTTTTTTGAGAGGTGCAAGACAGATCCCGGTTACTGGGACAATATCTCCAATGCTGGTTTACAGCGTATCTATGAAAAGTATACATGGAAGATTTATTCTGAGAAATTAATGACGCTTGCTGGAGTTTATGGCTTTTGGAAATATGTATCAAAACTGGAAAGACGTGAGACACGCCGCTATCTAGAGATGTTTTACACCTTAAAGTACAAAGACCTGGTTAAAACTGTGCCATTAGCTGTTGAAGAAATCGCTGATGGGACTGAAGAGAAGAGTACAGCATAG___CCTACAGTGGTACTGCCAGTTACATCATGATTCATCTGTGTAACTTTCTGTTTCCATTTGTGTATGGAATACACAGAAATCTCCAGATTGCATTATTGTTTTTTAGTAATCACAGCTGTTTC

Fln Alignment:

Contig4560___EEHLNKFPLNTPYMEFEHKLQEMGLEKGWGDNVEHVLDMIRLLLEILQAPDPSTLETFLGRIPMVFNVVILSPHGYFGQANVLGMPD--TGGQVVYILDQVRALEKEMLLRIKRQGLDITPQIVVVTRLIPEAYGTTCNQRIERISGTQHSRILRVPFKTDKGVLRKWVSRFDVWPYLERFSEDVSNEINAELQGQADLIIGNYSDGNLVASLIANKQGITQCNIAHALEKTKYPDSDLYWKNFEEKYHFSCQFTADIMAMNHADFIITSTYQEIAGSKDTVGQYESHTAFTLPGHYRVVNGIDVFDPKFNIVSPGADMQIYFPYTEKQHRLTTLHGTIEELLFSPEQTAEHMCVLNDRKKPIIFSMARLDRVKNMTGLVEWFAKNKRLRELVNLVVVAGDIDPSKSKDREEVAEIEKMHRLIKEYNLNGQFRWICAQKNRVRNGELYRYICDTRGAFVQPALYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVDGVSGFHIDPYHGDYASECIADFFERCKTDPGYWDNISNAGLQRIYEKYTWKIYSEKLMTLAGVYGFWKYVSKLERRETRRYLEMFYTLKYKDLVKTVPLAVEEIADGTEEKST
A6N837______________EEHLKKFPKDTPYAEFEYKLQELGLEKGWGENAEHALDTIHLLLEILQAPDPSNLETFLGRVPMVFNVVILSPHGYFGQANVLGMPDHPVDRLCIYLIN-VAPLENEMLLRIKQQGLDITPEIIVVTRLIPEAHGTTCNQRLEKISGTQHSRILRVPFRTEKGVVRDWVSRFDVWPYLERFSEDVTNEIAVELKGQPDLIIGNYSDGNLVASLMAHKQGITQCNIAHALEKTKYPDSDIYWKNFEEKYHFSCQFTADLIAMNHADFIITSTYQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMQIYFPYTEKQHRLTALHGTIEELLFNPEQTAEHMCALNDRKKPIIFSMARLDRVKNMTGLVEWFAKSKRLRELVNLVVVAGDIDPSKSKDREEVAEIEKMHRLVKEYNLNGQFRWICAQKNRVRNGELYRYICDTRGAFVQPALYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVDGVSGFHIDPYHGVSATERIADFFEKCKTDPSHWEKISNGGLQRIYEKYTWQIYADRLMTLSGVYGFWKYVSKLERRETRRYLEMFYSLKYRNLVKTVPLAVEESVNGIEEKST

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
780	16		83		0.994512
783	83			16	0.994512
910	33			66	0.997452
911	33			66	0.997452
941	40			60	1.0
970	50			50	1.0
993	20	80			0.995493
994	20		80		0.995493
995		80		20	0.995493
996		80	20		0.995493
1002	60		40		1.0
1296	16			83	0.994512
1438	20	80			0.995493
1548	40		60		1.0
1776		11		88	0.999937
1822	23			76	1.0
1843			66	33	0.997452
1846		33		66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain