SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4542

Length: 1152 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene4542

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	syntaxin [Nicotiana benthamiana]	-	-	0.0	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Sma3	Syntaxin, putative	-	-	1.43e-06	-

Source	Gene names
Sma3	At3g03800; At5g08080; CHLREDRAFT_195969; F20H23.28; GSVIVT00009730001; GSVIVT00026042001; GSVIVT00027097001; OSJNBa0007H12.38; OSJNBa0033B09.18; Os06g0168500; Os07g0164300; Os07g0528900; OsI_25009; OsI_26280; OsI_30412; OsJ_20269; OsJ_23199; OsJ_24527; P0

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	SNAP receptor activity	GO:0005484	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Target SNARE coiled-coil domain	IPR000727	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	B3 DNA binding domain	IPR003340	-	-
Sma3	Syntaxin, N-terminal	IPR006011	-	-
Sma3	Syntaxin/epimorphin, conserved site	IPR006012	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Arabidopsis thaliana	NP_568187.1	syntaxin-132 [Arabidopsis thaliana]	0.0	47%
RefSeq	Populus trichocarpa	XP_002325846.1	predicted protein [Populus trichocarpa]	0.0	54%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AB89

Fln msg: Separated hits, possible frame ERROR between 472 and 487, and overlapping frame ERROR between 867 and 855, your sequence is shorter than subject: 242 - 308

Fln protein: MNDLLADSVELPRMGASRDALDLEAGTSVTANTSDLGMEDxxxxxxKEIEKLMEKLNKQLQKLQDAHEESKSVTKASAMKAIKQRMEKDVDEVGKIARNIKQKLESLDADNVANRKKPGCEKGTGVDRLIETGDSEQIFQKAIQEQGRGRIMDTLAEIQERHDAVRDxxxxxxxLHQIFLDMELCWLSHKETCLITLKLRFPMLWTMCNQGLLLFKRPRHYSGIQGSGCALPS*FF**L*L*

Protein Length: 243

Fln nts: ATGGGGATGATGTGATGTGGGACACCCCACCTCACACCCCCTGCTGGCCAGGTCATTGCCACTGGCAAAATGCTGGAGTTGCCAAAATACCCACTTTCTTAATCTGACCCAAACCCTACTCACCTCAAACCACCGCCACTAGGACCCAAATCCCATTCCTGTTCTAAGTCCCATTTACAGGTAGATCCGTGTATGGGTTTTGCTTCATATGCAGAGTTGGTTTTGAATTTCATCTTCCTTCGTTTTGCTCAAGTTGCCTTAGCCAGGGCACTGTAAGCTGTCTGAACAATTCACAGGTTTTTGGTTCATTACATTACTTGCAGTGAGTTCTTATCAGTGAGCGTCCAAG_-_ATGAACGATCTATTGGCGGATTCTGTTGAGCTCCCCAGAATGGGGGCTTCCAGAGATGCATTAGATCTTGAGGCAGGGACTTCGGTCACTGCCAATACGTCAGATCTTGGAATGGAAGATTTxxxxxxxxxxxxxxxGAAAGAAATTGAAAAGTTGATGGAAAAGCTGAATAAACAATTGCAGAAGCTTCAGGATGCACACGAGGAATCCAAGTCTGTTACAAAGGCATCTGCTATGAAAGCAATTAAACAGCGCATGGAGAAAGATGTGGATGAAGTGGGAAAAATTGCTCGCAATATCAAGCAAAAACTTGAATCTCTTGATGCAGATAATGTAGCCAACAGAAAGAAACCTGGATGTGAGAAAGGCACCGGTGTTGATCGCTTGATAGAGACCGGGGATAGTGAGCAGATCTTCCAAAAGGCTATTCAGGAGCAAGGTCGAGGACGGATCATGGACACCTTAGCAGAGATTCAGGAGCGACATGATGCAGTCAGAGACATxxxxxxxxxxxxxxxxxxTCTGCATCAGATTTTCTTGGATATGGAACTGTGCTGGTTGAGTCACAAGGAGACATGCTTGATAACATTGAAACTCAGGTTTCCAATGCTGTGGACCATGTGCAATCAGGGACTGTTGCTCTTCAAAAGGCCAAGACATTACAGCGGAATTCAAGGAAGTGGATGTGCATTGCCATCATAATTCTTTTAATAATTGTAGCTGTAA___TTGTTGTTGGAGTTGTTAAGCCATGGCAAAGCAAACAATCTTAATAAGTTAAGTTTGGAGAGCTAGTTCGGTTTTCTTG

Fln Alignment:

Contig4542___MNDLLADSVELPRMGASRDALDLEAGTSVTANTSDLGMEDFxxxxxKEIEKLMEKLNKQLQKLQDAHEESKSVTKASAMKAIKQRMEKDVDEVGKIARNIKQKLESLDADNVANRKKPGCEKGTGVDRLIET------------------------------------------GDSEQI------------FQKAIQEQGRGRIMDTLAEIQERHDAVRDIExxxxDLHQIFLDM
D5AB89______________MNDLLTDSFELPRMGASKDALDLEAGTSVTANPSDLGMEDFxxxxxKDIEKLMEKLNKQLQKLQDAHEESKSVTKASAMKAIKQRMEKDVDEVGRIARNIKQKLESLDADNVANRKKPGCEKGTSVDRSRMTMTTTLKKKLKDRMSDFQTLRQMIQEEYREVVERRVFTVTGTKADEETIDRLIETGDSEQIFQKAIQEQGRGRIMDTLAEIQERHDAVKDIExxxxDLHQIFLDM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain