SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4533

Length: 1327 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene4533

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative elongation factor n=1 Tax=Cryptomeria japonica RepID=Q1XG58_CRYJA	-	-	0.0	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Sma3	Elongation factor 1-delta 1	-	-	2.721e-14	-

Source	Gene names
Sma3	At1g30230; At2g18110; At5g12110; At5g19510; DDTFR10; EF-1-beta; F8D23.11; GSVIVT00017287001; GSVIVT00017928001; LOC_Os03g29260; LOC_Os07g42300; LOC_Os07g46750; MXC9.7; OSJNBa0002D18.20; Os03g0406200; Os07g0614500; Os07g0662500; OsI_11978; OsI_26859; OsI_2

Source	GOs	Term	Type	Identity
Sma3	eukaryotic translation elongation factor 1 complex	GO:0005853	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	translation elongation factor activity	GO:0003746	Molecular Function	-
Sma3	translational elongation	GO:0006414	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Translation elongation factor EF1B, beta/delta chains, conserved site	IPR001326	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3	Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange	IPR014038	-	-
Sma3	Translation elongation factor EF1B/ribosomal protein S6	IPR014717	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G30230.2	" Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 chr1:10639286-10640601 FORWARD LENGTH=260"	65%
RefSeq	Arabidopsis thaliana	NP_174314.2	elongation factor 1-delta 1 [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002318125.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKP8

Fln msg:

Fln protein: MAVSFSNLSTESGVEQLDQFLLPRSYISGYQASTDDIRVYSALSQAPGSHYINASRWYNHISALLAPSFSGEGVGVQIEGGSQPSKDEDEDDDDVDLFGEETEEEKKAAEERSAAVKASIKKKESGKSSVLLEVKPWDDETDMQKLEETVRSIKMDGLLWGASKLIPVGYGIKKLQIMMTIEDDLVSVDNLIEDYLTVEPANEYIQSCDIVAFNKI*

Protein Length: 218

Fln nts: AGAAGTAACAATAGGGAGGCATACCAGGCATACCAAACCCTCCGCTCATAATTCTCTGTCTAATCGGCGGCAGCGGAATTAGAGGCAGAGGCCGAGGGTGCAAGCGCAAGCTCAAGCGCAGTAGTAAATCCTTTCTCTGCATAGAAGAGGTCAAGA_-_ATGGCCGTCTCATTCTCCAATCTCAGCACTGAGTCAGGCGTGGAGCAGCTGGATCAGTTCTTGCTCCCACGCAGTTATATTTCCGGGTATCAGGCATCAACGGATGACATAAGAGTATACTCTGCACTTAGCCAAGCACCTGGATCCCATTACATCAATGCCTCCCGTTGGTACAACCACATCAGTGCCTTACTAGCCCCAAGTTTTTCTGGGGAAGGTGTTGGTGTTCAAATCGAAGGAGGGAGTCAGCCATCAAAGGACGAGGATGAAGACGACGATGATGTGGATCTCTTCGGTGAAGAAACCGAAGAGGAAAAGAAGGCAGCCGAAGAGCGCTCGGCGGCTGTAAAAGCCTCTATTAAAAAGAAAGAGAGTGGGAAGTCATCAGTTCTTCTGGAAGTGAAGCCATGGGATGATGAAACAGATATGCAAAAACTGGAGGAAACAGTACGCAGCATCAAGATGGATGGTTTGCTGTGGGGAGCCTCAAAACTGATACCAGTGGGATATGGAATCAAGAAGCTGCAGATAATGATGACCATCGAGGATGATCTTGTATCTGTTGACAATCTCATTGAGGATTATCTCACAGTTGAGCCGGCCAATGAGTACATTCAGAGTTGTGATATTGTTGCATTCAATAAGATCTAA___TTTGGGAGGTGCTAAATCTACATCAAATTTGAATTGGTTGCTTGGAAGGTTTAGTAGCCTGGAGAGATTGTCTTCTGTGGAGGCTGGGAAACATGTAATGAGCAAGCTAGTCACTTCGTTTTTTTTAACTAGATCATTTCCTGAGAATCAGTTTCTAAAAACCTTTTGAAGTTTTATAAAATTGTTGTGACCCAAGATTGCAGTTTGGGGTAAATTTTTTCAAGATTTATGCATAGTTAAATTCTTTCAATATTTATGCATAATGAAATTTTTTGTATGTTCCTTTCGCTGGCTTACAAATTCCGTTTTCCAGTGGCTATGTTTATGTTGCTGTCGGCGAAGCTATATTAGGGACTAATACCCAATATTTGTTTATTTCCAAAGTTCAACTCTACAAATATTGTATCACCAGCTAGTGGTTTACTGGTATCCTAAGGTCGTAGGACATTGTATGCCGAAGTCAGTTACTTGACTTCATTACTCTTCCCTGTGTTTTAATATTAACTTAATTACTCTTCTC

Fln Alignment:

Contig4533___MAVSFSNLSTESGVEQLDQFLLPRSYISGYQASTDDIRVYSALSQAPGSHYINASRWYNHISALLAPSFSGEGVGVQIEGGSQPSKXXXXXXXXXX--------LFGXXXXXXXXXXXXXXXXXXXSIKKKESGKSSVLLEVKPWDDETDMQKLEETVRSIKMDGLLWGASKLIPVGYGIKKLQIMMTIEDDLVSVDNLIEDYLTVEPANEYIQSCDIVAFNKI
A9NKP8______________MAVTFSNLSTASGVEHLDQFLLTRSYISGYQASTDDIRVYCALGKAPGSDYINASRWYNHISALLAPRFSGEGVGVQVEGGSQPSKASTPAPVKDEDEDDDDVDLFGEETEEEKKAAEERSAAVKASIKKKESGKSSVLLDVKPWDDETDMQKLEETVRSIKMEGLFWGASKLIPVGYGIKKLQIMMTIEDDLVSVDDLIEDCLTAEPANEYIQSCDIVAFNKI

SNPs (tot: 3)

Position	A %	C %	T %	Probability
1179		1	94	0.930835
1305	94		5	0.999997
1327		66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain