SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4519

Length: 1779 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene4519

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cleavage and polyadenylation specificity factor, putative n=1 Tax=Ricinus communis RepID=B9RC56_RICCO	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	0.0	-
Sma3	Zinc finger, RING-type	IPR001841	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G11680.1	Zinc finger, C3HC4 type (RING finger) family protein chr4:7053737-7055516 REVERSE LENGTH=390	58%
RefSeq	Arabidopsis thaliana	NP_567379.1	E3 ubiquitin-protein ligase [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002320753.1	predicted protein [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNE7

Fln msg:

Fln protein: MERRPDTGVDSSPLLESGNTNNEARGTVFQSAARFIRRAGGRRMMREPSMLVRENAAQQLEERQSDWAYSKPVIILDILWNLSFVVVSVVILSSSLDERPTTPLRIWIVGYALQCILHMIYVAYEYMRRYRQRLPSVVSAGGSESASSAGEQVNSQGGGVPREAETGRQETEERSSIAKRLESVNTMFSFFWWIVGFYWLIAGGKSLSEDAPRLYWLCIVFLAFDVCFVAFCAAVACMIGIAVCCCLPCIIAILYAVANQDGASETEISLLPKFRFCRIGPSEKNNGEKSTSYGGIMTSTGGESTSERALSPEDAECCICISAYEDGAELYELPCNHHFHCGCIAKWLRINATCPLCKYNVVKNGSEEV*

Protein Length: 371

Fln nts: ATGGGGGTCGACAGCAACTCAAAGATCCGACCCGCGACCTTGTCCTACTTTCATGCAACAGATGTTTTCCTAGCGGAATAATTCAGTTTTGGTCCAAATGAGTGTCGGGCCCTGAAATCGATCTCGTGCCTCCCTCCCGAATGTTCTAGAGTGAAAATTAAGCGGAACACCTGCAAGACTTGCATTGAAACCCTAAACAAAACCCTGGATGCAGGAAATTTTGCTAATGCGCGGTGAATTGAGAATGTAACGAAGATTTCAAGGGTGAAA_-_ATGGAGAGGAGGCCAGACACAGGCGTGGATAGCAGTCCATTGTTGGAAAGCGGCAACACTAATAATGAGGCTCGAGGGACAGTTTTCCAAAGCGCCGCGCGATTCATTCGCAGGGCGGGTGGCAGAAGAATGATGAGAGAGCCGTCGATGTTGGTGCGCGAAAACGCGGCGCAGCAATTGGAAGAACGGCAGAGCGATTGGGCGTATTCCAAGCCCGTGATCATATTGGACATCCTGTGGAACCTGTCGTTTGTGGTCGTTTCGGTCGTGATTTTATCGTCGTCCTTGGACGAAAGGCCCACGACGCCCTTGAGGATTTGGATTGTAGGCTACGCCCTGCAGTGCATCTTACATATGATTTACGTGGCTTATGAATATATGAGGCGGTATCGGCAACGTTTGCCTTCGGTTGTCAGTGCGGGGGGTTCTGAGAGCGCTTCCAGTGCAGGTGAGCAGGTCAATTCCCAAGGCGGTGGAGTGCCTCGAGAGGCAGAGACAGGCCGCCAGGAGACGGAAGAACGCAGCAGTATAGCAAAGCGGCTGGAATCTGTGAACACAATGTTTTCATTTTTTTGGTGGATTGTTGGATTTTATTGGCTAATTGCTGGTGGGAAATCTCTTTCAGAGGATGCTCCACGGCTTTACTGGCTCTGTATCGTGTTTCTGGCATTTGATGTGTGTTTTGTTGCATTTTGTGCTGCGGTGGCATGTATGATTGGCATTGCTGTCTGCTGTTGTCTACCTTGCATTATAGCCATTCTATATGCCGTGGCTAACCAAGATGGTGCATCTGAAACAGAAATTAGCCTTCTTCCTAAGTTTCGGTTCTGTCGAATTGGCCCATCTGAGAAAAACAATGGTGAAAAATCTACATCCTACGGAGGAATTATGACTTCAACAGGTGGAGAATCTACATCTGAACGAGCTCTTAGTCCAGAGGATGCAGAGTGCTGTATTTGTATTTCTGCATATGAAGATGGAGCGGAATTGTATGAACTTCCTTGCAACCACCATTTCCATTGCGGATGCATTGCAAAGTGGCTGCGGATCAATGCCACTTGTCCTCTTTGCAAATACAATGTTGTCAAGAATGGCAGTGAGGAGGTGTAA___TTTATATAGTGTTTGCTGATGCATGGTTTAGATGATAAGGAAACATTACAGTTTTTAGAGATTGGCACTGCTCAAAATGTGGCTACCCAATAGAATTAGTCTAGACCCTTGAATGTAATTCTCATTGAATATTTAGTTGAGGAATTGGCATTGTGCCAATTCATAATTATTTGCCTGCAAAACATTTTCATGATGAGCAGCAGCAATGGAAAGCATATTGGAAAGAATTGTCAACATCGATCTTTTGGAAGGTGTTTGTCACAAACGTGTGGAAAACTCTAGAATATTTTGAGCAAATTTTTGGGAGATAGAATCACATGGTTTTCTCGACCATGTCATATTTGGCCCTATTTGTTATACTTTATCTCTGAATCCTGGGGCATATGATAAATTTGCACA

Fln Alignment:

Contig4519___MER-RPDTGVDSSPLLESGNTNNEARGTVFQSXXXXXXXXXXXXXXXEPSMLVRENAAQQLEERQSDWAYSKPVIILDILWNXXXXXXXXXXXXXXXDERPTTPLRIWIVGYALQCILHMIYVAYEYMRRYRQRLPXXXXXXXXXXXXXXXXQVNSQGGGVPREAETGRQETEERSSIAKRLESVNTMFSFFWWIVGFYWLIAGGKSLSEDAPRLYWLCIXXXXXXXXXXXXXXXXXXMIGIAVCCCLPCIIAILYAVANQDGASETEISLLPKFRFCRIGPSEKNNGEKSTSYGGIMTSTGGESTSERALSPEDAECCICISAYEDGAELYELPCNHHFHCGCIAKWLRINATCPLCKYNVVK---NGSEEV
B8LNE7______________MERTRPDTGVDSSPLLESGTTNNEARGSAYQSAARFLRRAGGRRMMREPSMMVRENAAQQLEERQSDWAYSKPVVMLDLLWNLSFVVVSVVILTSTLEERPTTPLRVWIAGYALQCLLHMIYVAYEYTRRNRQRSPSVGSAGGSESASSAGEQVNSQVGRAPQEAETGRQETEERSSIAKRLESVNTMFSFFWWIVGFYWLLAGGKSLAEDAPRLYWLCIVFLAFDVFFVAFCAAVACMIGIAVCCCLPCIIAILYAVANQDGASETEINLLPKYRFCRIGPSEKNNSEKSPSYGGVMTLICGESTSERVLGAEDAECCICLSAYEDGVELYELPCNHHFHCGCIAKWLRINATCPLCKYNVVKNDDNGSEDV

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
680		85		14	0.993533
781	12		87		0.992554
783			87	12	0.992554
784	87		12		0.992554
785		87		12	0.992554
877	12		87		0.992554
880			87	12	0.992554
993		85		14	0.993533
1029		85		14	0.993533
1068	87			12	0.992554
1069	87		12		0.992554
1070		87	12		0.992554
1071	87		12		0.992554
1142	16	83			0.994512
1144	83		16		0.994512
1145		83	16		0.994512
1146	83		16		0.994512
1152		83		16	0.994512
1170	28		57		1.0
1256		77		22	0.999999
1374	13		86		0.999973
1568		11		77	0.968132
1569	11			77	0.968132
1571	11			88	0.923564
1575			87	12	0.992554
1603	28		71		1.0
1604		28	71		1.0
1606	66			33	1.0
1607	66			33	1.0
1615		25		75	0.996473
1661	27			72	1.0
1677		70	30		1.0
1772	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain