SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4494

Length: 953 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene4494

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative nitrite transporter [Arabidopsis thaliana] sp\|Q9SX20.1\|PTR18_ARATH RecName: Full=Probable nitrite transporter At1g68570 gb\|AAD49986.1\|AC008075_19 Similar to gb\|AF023472 peptide transporter from Hordeum vulgare and is a member of the PF\|00854 Pept	-	-	0.0	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Sma3	Nitrate transporter, putative	-	-	1.479e-27	-

Source	Gene names
Sma3	At1g68570; At1g69870; At2g02040; At3g16180; At3g54140; B1026C12.10; B1377B10.10; F14H20.11; F24B22.100; F24J5.19; GSVIVT00000074001; GSVIVT00000076001; GSVIVT00001825001; GSVIVT00001827001; GSVIVT00001828001; GSVIVT00001829001; GSVIVT00001831001; GSVIVT00

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	high affinity oligopeptide transporter activity	GO:0015334	Molecular Function	-
Sma3	dipeptide transporter activity	GO:0042936	Molecular Function	-
Sma3	tripeptide transporter activity	GO:0042937	Molecular Function	-
Sma3	oligopeptide transport	GO:0006857	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	dipeptide transport	GO:0042938	Biological Process	-
Sma3	tripeptide transport	GO:0042939	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Legume lectin, alpha chain, conserved site	IPR000985	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Sodium:dicarboxylate symporter, conserved site	IPR018107	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G68570.1	Major facilitator superfamily protein chr1:25746811-25750110 FORWARD LENGTH=596	0.0	46%
RefSeq	Arabidopsis thaliana	NP_177024.1	putative nitrite transporter [Arabidopsis thaliana]	0.0	46%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AA65

Fln msg: your sequence is shorter than subject: 293 - 629

Fln protein: AAIMTPGHTPPIDSWRVCSVEKIEGLKSVIRTLPIFSCGIANQITNAQQHTFPVLQAQSMDRRIGSKGFKIPAGSFSVFSLFVLIAWLPFYDRVVVPYARHNTRNNRGITVFQRLGIGFAISSLSMLVAGLVEVKRRTTARSHGLTDQPLAVVPISALWLLPQFCIYGLAEAFYSVGYVEFFYNQFPATMRSTAIAMCLCMTALGNYLNAVIVNVIHNTTGRDGQPDWLNDNMNRGHLEYFYWLLSGLEALNLVYFIICTGTYKHRDPFTSVDAKPDASTGGHEIEFECMQE*

Protein Length: 294

Fln nts: GCTGCCATAATGACCCCCGGCCACACCCCACCGATTGACAGCTGGAGGGTCTGTTCCGTTGAGAAGATTGAGGGGCTCAAATCCGTCATCAGAACACTGCCCATATTTTCCTGCGGAATTGCCAATCAAATCACAAACGCACAGCAACACACGTTCCCCGTTCTGCAGGCCCAGAGCATGGACCGGCGGATAGGCTCCAAGGGTTTCAAAATACCCGCGGGATCGTTCTCGGTTTTCTCTCTGTTTGTTCTCATCGCATGGCTGCCATTTTACGACAGAGTGGTCGTGCCCTATGCCAGGCACAATACAAGGAATAACAGGGGTATCACAGTGTTTCAAAGACTGGGGATCGGATTCGCCATTTCATCATTATCTATGTTGGTAGCTGGTTTAGTAGAAGTGAAGAGACGGACTACCGCCCGAAGTCACGGTCTAACTGACCAGCCGTTGGCCGTTGTTCCCATTTCTGCACTGTGGTTGCTTCCCCAGTTTTGCATCTACGGACTGGCAGAAGCATTTTACTCAGTTGGCTACGTGGAGTTCTTTTACAATCAATTCCCGGCCACGATGCGCAGCACGGCGATAGCGATGTGTTTGTGCATGACTGCGTTGGGCAATTATTTAAACGCCGTGATCGTCAATGTAATCCACAATACCACCGGCCGCGACGGGCAACCGGACTGGCTCAACGACAATATGAACCGTGGTCATCTCGAATATTTCTACTGGCTTTTGTCGGGGCTGGAGGCCCTCAACTTGGTATATTTTATAATCTGTACTGGTACCTATAAACATCGAGATCCGTTCACTTCCGTAGATGCTAAACCTGACGCTTCGACTGGTGGTCACGAGATTGAATTCGAATGCATGCAAGAATAG___GAAGAGAATTATGGGCTTCATCAGAGTGGGGTCAATTCATTTTTCACTGGTACATTTCCATTTCAAATCTCTAC

Fln Alignment:

Contig4494___AAIMTPGH-----TPPIDSWRVCSVEKIEGLKSVIRTLPIFSCGIANQITNAQQHTFPVLQAQSMDRRIGSKGFKIPAGSFSVFSLFVLIAWLPFYDRVVVPYARHNTRNNRGITVFQRLGIGFAISSLSMLVAGLVEVKRRTTARSHGLTDQPLAVVPISALWLLPQFCIYGLAEAFYSVGYVEFFYNQFPATMRSTAIAMCLCMTALGNYLNAVIVNVIHNTTGRDGQPDWLNDNMNRGHLEYFYWLLSGLEALNLVYFIICTGTYKHRDPFTSVDAKPDAST
D5AA65______________AAIITEGDIRPDGSSPVSSWRICSVEQIEGLKSIMRTLPIFSCGIANQITNAQQHTFSVLQALSMDRRLGSKGFQIPAGSFSVFSLLVLIAWLPFYERVVVPIARRITKDNRGITMFQRMGIGFSISALSMLVAGLVEVKRRNTALSHGLADQPSAIVPISALWLLPQFCIVGLGEAFHTIGNMEFFYDQFPATMRSTAIAMSSCTSALGHYLSAIIVTVVHNTTGRDGRPDWLDDNLNRGHLEYFYWLLSTMEALNLIYFVVCARWYKRGNP-RAVEANPDAST

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
479		50		50	1.0
504			80	20	0.995493
524			28	71	1.0
529		28		71	1.0
532		71		28	1.0
533		28		71	1.0
536		16	83		0.994512
544		83		16	0.994512
551	83		16		0.994512
594		33	66		1.0
597			16	83	0.994512
627	83		16		0.994512
631	33	66			1.0
633		16		83	0.994512
646	83	16			0.994512
658		83	16		0.994512
666	16		83		0.994512
667		83	16		0.994512
691	80		20		0.995493
693		80		20	0.995493
700	80	20			0.995493
708		20		80	0.995493
711		25		75	0.996473
720	66		33		0.997452
729		66		33	0.997452
741			66	33	0.997452
743		33	66		0.997452
747		33	66		0.997452
750	33		66		0.997452
783	33			66	0.997452
784		33	66		0.997452
788		66		33	0.997452
789		66		33	0.997452
804		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain