SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4481

Length: 868 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene4481

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative MADS box transcription factor PrMADS6 n=2 Tax=Pinus radiata RepID=O24490_PINRA	-	-	0.0	92%
FL-Next	tr=Putative MADS box transcription factor PrMADS6; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	0.0	77%
Sma3	AGAMOUS-like protein	-	-	5.939e-30	-

Source	Gene names
Sma3	AG; AG-1; AG-2; AG1; AG1-T2; AG2; AGAMOUS; AGL; AGL1; AGL11; AGL19; AGL20; AGL29; AGL39; AGL7; AVAG1; AVAG2; ApMADS2; At2g45660; At3g58780; At4g22950; At5g62165; CAG1; CAG2; CAG3; CMB; CMB1; CUM1; CUM10; CerMADS2; CitMADS1; CitMADS6; DP; F17K2.19; F7H19.1

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	positive regulation of flower development	GO:0009911	Biological Process	-
Sma3	vernalization response	GO:0010048	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-
Sma3	regulation of timing of transition from vegetative to reproductive phase	GO:0048510	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Transcription factor, MADS-box	IPR002100	-	-
Sma3	Transcription factor, K-box	IPR002487	-	-
Sma3	Protein of unknown function DUF538	IPR007493	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G45660.1	AGL20, SOC1, ATSOC1 AGAMOUS-like 20 chr2:18807799-18810193 REVERSE LENGTH=214	5.00264e-43	77%
RefSeq	Arabidopsis thaliana	NP_182090.1	MADS-box protein SOC1 [Arabidopsis thaliana]	7.00649e-43	77%
RefSeq	Populus trichocarpa	XP_002302552.1	MIKC mads-box transcription factor SOC1 [Populus trichocarpa]	5.00264e-43	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: O24490

Fln msg: Overlapping hits, possible frame ERROR between 392 and 391, and possible frame ERROR between 738 and 743, your sequence is longer than subject: 253 - 214

Fln protein: MPLFSSGRALKSPCFELIAMNLMESYEAKGKGEKRRTVRGKTQLKRIENGTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSPRGKRYEFANPSMQKMLARYxxKFSAGSNTTSTAKEQDVQCLKRQIANMEERIEILESMHRKMLGEELASCALKDLNELESQVERGLRNVRARKTEILVTEIEQLQRKEWILSEENAFFGKKFVDPHSVSKTPGSExx*SIQNSEIETQLVMRPPCTNAHFAINSSH*

Protein Length: 254

Fln nts: ATGGGGATCCTTCTTATTTATGGCCATAGAAGTGAACACTTCTGTAATGACTATGTTTTGCCCTTTCAATTTTA_-_ATGCCTCTGTTTTCTAGTGGGCGAGCGTTGAAAAGCCCCTGTTTTGAACTGATAGCTATGAATCTGATGGAGTCTTATGAGGCAAAGGGAAAGGGAGAGAAGAGGAGAACGGTGAGGGGAAAAACCCAGTTGAAGAGGATTGAGAACGGGACCAGCAGGCAGGTTACTTTTTGTAAGCGCAGGAACGGTCTGCTGAAGAAAGCTTACGAGCTCTCGGTGCTTTGTGATGCCGAAGTGGCACTTATTGTTTTCTCTCCGAGAGGGAAGCGCTATGAGTTCGCTAATCCCAGCATGCAGAAAATGTTGGCACGGTACxxxxxxAAATTTTCGGCAGGAAGTAACACAACGAGTACAGCAAAAGAGCAAGATGTCCAGTGTTTAAAACGGCAAATTGCGAATATGGAAGAAAGGATTGAAATTCTTGAATCCATGCATAGAAAGATGTTGGGGGAGGAGCTGGCATCATGCGCATTGAAGGATTTGAATGAGTTGGAGAGTCAGGTTGAACGAGGTTTGAGAAATGTACGAGCGCGAAAGACTGAAATATTGGTGACTGAAATAGAGCAACTTCAAAGAAAGGAATGGATATTAAGCGAGGAGAATGCTTTCTTCGGTAAAAAGTTCGTGGATCCTCATTCCGTTTCGAAAACTCCTGGAAGTGAAxxxxxxTGAAGCATCCAAAACAGTGAAATCGAGACTCAACTGGTTATGAGACCGCCATGTACAAATGCTCATTTTGCTATTAATAGTTCTCATTGA___TAATCAATGTATTCGTAACTGTGTTATCAATTTATTATG

Fln Alignment:

Contig4481___RGKTQLKRIENGTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSPRGKRYEFANPSMQKMLARYxKFSAGSNTTSTAKEQDVQCLKRQIANMEERIEILESMHRKMLGEELASCALKDLNELESQVERGLRNVRARKTEILVTEIEQLQRKEWILSEENAFFGKKFVDPHSVSKTPGSESxxSIQNSEIETQLVMRPPCTNAHFAINSSH
O24490______________RGKTQMRKIESATSRQVTFSKRRNGLLKKAYEMSVLCDAQLGLIVFSPRGKVYEFSSTCMQKMLARYxNFSEGSKATSTAKEQDVQGLKRQIANMEERIEILESMHRKMLGDELASCALKDLNELESQVERGLRNVRARKTEILVTEIEQLQRKEWILSEENAFLGKKFVHPHSVSKTPGSESxxSIQNSEVETQLVMRPPCTNAHFLINSSH

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
319			33	66	0.997452
355		66		33	0.997452
406		66		33	0.997452
407	66			33	0.997452
743			75	25	0.996473
766	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain