SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4415

Length: 1723 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene4415

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-galactosidase n=1 Tax=Persea americana RepID=Q0EDA8_PERAE	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	beta-galactosidase complex	GO:0009341	Cellular Component	-
Sma3	beta-galactosidase activity	GO:0004565	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycoside hydrolase, family 35	IPR001944	-	0.0	-
Sma3	D-galactoside/L-rhamnose binding SUEL lectin domain	IPR000922	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002306893.1	predicted protein [Populus trichocarpa]	0.0	45%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPW7

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 18 aas, your sequence is longer than subject: 455 - 317

Fln protein: MDAHSDTTVNFEGLTYNLPAWSVSILPDCKNVAFNTAKINVRSNSATLIAPRLKLGSSNKLLNQKMEQLISWETFQENFGDIGNAQFQRQGLLEHISTTKDTTDYLWYKISVDVNEDELSNIPPVLAIGSQGHVVHVFINNNYAGSAHGNKTNPFFMFELPISLTLGKNDIALLSVMVGLPNSGAHFEQKSAGISTVTLQGFKDGTHDLSQELWTYQIGLFGEMSTIYSDIGVVRVNWTSSSTPNPPLTWYKAMIDVPDGDEPLMLDLSSMGKGQAWINGEHIGRYWTSFLVPVGECSGCDYRGNYSLHRCATKCGQPSQTLYHVPRSWLRPTGNLLVLFEETGGDSSKVSLLTGSIDSVCAQAFETHSPSIQSWQKSEVNSEVLHENVEPSLRLNCSVGRRISSIKFASFGNPSGVCGNFVKGTCHLVESKEVVEKACLGQRGCSITISPTLS*

Protein Length: 456

Fln nts: AGGGCACCTTTGTCCACTATTACATGTATCATGGAGGGACAAACTTCGGAAGATCAGGAGGGCCATTTATCACTACAAGCTATGATTATGATGCACCAATAGATGAATATGGTGACATTCGACAACCCAAATGGGGCCATCTAAGAGATTTGAATATGGCAATCAAGCTTAACAGCGATAGCTTACTTTTGGGAACACCTGAGTCTTTATCTACTAGGTCCTGATCAAGAGGCACATGTTTACAGAAGAGAACCAGGGTTATGTGCTGCTTTTCTGTCAAAC_-_ATGGATGCTCACTCTGATACAACTGTCAACTTCGAGGGTTTGACATATAATCTGCCTGCATGGTCCGTCAGCATACTTCCTGATTGCAAGAATGTGGCATTCAATACTGCAAAGATAAATGTTCGATCAAACTCTGCTACACTCATTGCTCCTCGGCTAAAGCTTGGGTCATCAAACAAATTACTAAATCAGAAAATGGAGCAATTGATTAGTTGGGAAACATTCCAAGAGAACTTTGGAGATATTGGAAATGCTCAATTTCAGAGACAGGGTCTGTTGGAACATATCAGTACAACCAAGGATACAACAGACTACCTCTGGTACAAAATTAGTGTTGATGTCAATGAAGATGAGCTGAGTAACATTCCACCAGTCCTGGCTATTGGGTCTCAAGGTCATGTTGTTCATGTCTTTATCAACAATAATTATGCAGGAAGTGCACATGGCAATAAAACAAATCCATTCTTCATGTTCGAGCTACCTATTTCTCTAACTTTGGGGAAAAATGATATAGCTCTATTGAGTGTGATGGTCGGACTACCGAATTCGGGGGCACACTTTGAGCAAAAAAGTGCAGGAATAAGCACTGTTACACTTCAAGGTTTTAAGGATGGAACACATGACTTGTCACAAGAATTATGGACATACCAGATTGGCTTATTTGGAGAAATGTCAACCATCTATTCTGATATTGGTGTTGTTAGAGTGAACTGGACATCTTCATCAACTCCTAATCCACCGCTGACATGGTACAAGGCAATGATTGATGTGCCTGATGGGGATGAACCTCTTATGTTAGACCTGAGCAGTATGGGTAAAGGTCAAGCATGGATAAATGGAGAACATATTGGACGTTATTGGACTTCCTTTTTGGTGCCTGTAGGAGAGTGTTCAGGGTGTGATTATCGAGGAAATTACAGTTTACACAGATGTGCAACAAAATGTGGACAACCTTCCCAAACGCTGTATCATGTTCCTCGATCGTGGCTGCGGCCTACTGGGAATTTGTTGGTGTTATTTGAAGAGACAGGAGGTGACTCGTCAAAAGTATCTCTACTTACTGGATCCATTGATAGTGTCTGTGCACAAGCCTTCGAAACTCATTCCCCATCTATCCAGTCGTGGCAAAAATCAGAAGTCAACTCTGAGGTGCTACATGAAAATGTAGAGCCAAGTCTTCGGCTTAATTGTTCTGTGGGCAGAAGAATTTCCTCCATCAAGTTTGCAAGCTTTGGGAATCCAAGTGGAGTATGTGGAAATTTCGTGAAAGGGACATGCCATTTAGTAGAATCAAAAGAGGTTGTGGAAAAGGCTTGTTTAGGACAGCGTGGGTGTTCGATTACCATCTCACCCACGCTGTCCTAA___ACAAGCCTTTTCCACAACCTCTTTTGATTCTACTAAATGGCATGTCCCTTTCACGAAATTTCCTCCCAAAGCTTGC

Fln Alignment:

Contig4415___MFELPISLTLGKNDIALLSVMVGLPNSGAHFEQKSAGISTVTLQGFKDGTHDLSQELWTYQIGLFGEMSTIYSDIGVVRVNWTSSSTPNPPLTWYKAMIDVPDGDEPLMLDLSSMGKGQAWINGEHIGRYWTSFLVPVGECSGCDYRGNYSLHRCATKCGQPSQTLYHVPRSWLRPTGNLLVLFEETGGDSSKVSLLTGSIDSVCAQAFETHSPSIQSWQKSEVNSEVLHENVEPSLRLNCSVGRRISSIKFASFGNPSGVCGNFVKGTCHLVESKEVVEKACLGQRGC
A9NPW7______________MFELPISLIPGTNDIALLSVMVGLPNSGGHFERKIAGISTVTLRGFKDGTRDLSQELWTYQIGLLGEMSTIYSDVGFISVNWTSSSTPNPPLTWYKAVIDVPDGDEPVILDLSSMGKGQAWINGEHIGRYWISFLAPLGDCSKCDYRGNYSLHKCATNCGQPSQTLYHVPRSWLRPTGNLLVLFEETGGDPSKVSLLTRSIDSVCAHAFETHPPSIQSWQKTKVNSEVLRENVEPSLQLDCSVGRRISSIKFASFGNPKGVCGNFMKGTCHSVESEKAVEKACLGQHGC

SNPs (tot: 45)

Position	A %	C %	G %	T %	Probability
507	10	90			0.90298
508		90		10	0.90298
509	90			10	0.90298
510	90		10		0.90298
512	90		10		0.90298
637		80		20	0.999996
701	71		14	14	0.984337
1119	88		11		0.923564
1185	50		50		1.0
1237			11	88	0.923564
1240		88	11		0.923564
1241		88		11	0.923564
1242	88		11		0.923564
1244	88	11			0.923564
1246			88	11	0.923564
1247		88		11	0.923564
1248			11	88	0.923564
1251	88		11		0.923564
1257		11		88	0.923564
1260	11	88			0.923564
1276			90	10	0.90298
1278		90	10		0.90298
1285		11	88		0.923564
1286	88			11	0.923564
1287	88		11		0.923564
1289		11		88	0.923564
1290	11			88	0.923564
1291		11	88		0.923564
1293		11		88	0.923564
1294	11		88		0.923564
1359	44		55		1.0
1405			57	42	1.0
1436	10	90			0.90298
1438	90		10		0.90298
1439		90	10		0.90298
1440	90		10		0.90298
1442		10	90		0.90298
1444	90			10	0.90298
1445	90			10	0.90298
1584		25		75	0.996473
1604	33		66		0.997452
1612	14			85	0.993533
1613		14	85		0.993533
1614	14		85		0.993533
1615			85	14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain