SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4401

Length: 372 nt

UniGene Fasta

>sp_v3.0_unigene4401
ATGGGGGAACCGCCATAGTAACCACCACGTGCGTTTCATTATCTTTTATCTTTTCCTTGACTGCTTTTTATGAAGTTGTACTGGGAGCTAGTGCTTGCTAATCTAAAAATTGCTCCATGGATCTTCTCTGAAATGTTTGATGCTTCTTGCACTTAATTAGAATGTTCCTGGGGGTACCACATCATTGCAAGGGTAACAGAGCTCGATTCGCAGATTGGTTCGACCCGGAATTCACTTTTGACTCTGTGTTTGATAGCCTGACTGTAGTTATGCTAATTGTGGTTACATTCGTAAGTAGCTTGGTCCATCTTTATTCTATTTCATATATGTCCGAGGATCCACATAGCCCTCGATTTATGTGTTATTTATCCA

Ace file of the UniGene sp_v3.0_unigene4401

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NADH-ubiquinone oxidoreductase chain 5 n=325 Tax=Magnoliophyta RepID=NU5M_ARATH	-	-	9.0e-24	54%
FL-Next	sp=NADH-ubiquinone oxidoreductase chain 5; Triticum aestivum (Wheat). Mitochondrion.	-	-	0.0	56%
Sma3	NADH-ubiquinone oxidoreductase chain 5	-	-	7.798e-18	-

Source	ECs	Term	Type	e value	Identity
Sma3	NADH dehydrogenase (ubiquinone).	EC:1.6.5.3	-	3.746e-14	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Oxidative phosphorylation	00190		3.746e-14	%
Sma3	Metabolic pathways	01100		3.746e-14	%

Source	Gene names
Sma3	NAD5; ND5; OtMtg00360; POPTRDRAFT_812198; nad5; nadh dehydrogenase subunit 5; nd5; orf399;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	mitochondrial inner membrane	GO:0005743	Cellular Component	-
Sma3	mitochondrial respiratory chain	GO:0005746	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	NADH dehydrogenase (ubiquinone) activity	GO:0008137	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	ATP synthesis coupled electron transport	GO:0042773	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal	IPR001516	-	-
Sma3	NADH:ubiquinone/plastoquinone oxidoreductase	IPR001750	-	-
Sma3		IPR003916	-	-
Sma3	NADH-plastoquinone oxidoreductase, chain 5	IPR003945	-	-
Sma3	NADH dehydrogenase subunit 5, C-terminal	IPR010934	-	-
Sma3	NADH-plastoquinone oxidoreductase, chain 5 subgroup	IPR018393	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	ATMG00665.1	NAD5B, NAD5.2, NAD5 NADH dehydrogenase 5B chrM:190740-190761 REVERSE LENGTH=669	1.0e-27	53%
RefSeq	Arabidopsis thaliana	NP_085478.1	NADH dehydrogenase subunit 5 (mitochondrion) [Arabidopsis thaliana]	2.0e-27	53%
RefSeq	Populus trichocarpa	XP_002333105.1	predicted protein [Populus trichocarpa]	4.0e-19	97%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q37680

Fln msg: Distance to subject end: 552 aas, your sequence is shorter than subject: 123 - 670

Fln protein: GGTAIVTTTCVSLSFIFSLTAFYEVVLGASAC*SKNCSMDLL*NV*CFLHLIRMFLGVPHHCKGNRARFADWFDPEFTFDSVFDSLTVVMLIVVTFVSSLVHLYSISYMSEDPHSPRFMCYLS

Protein Length: 124

Fln nts: ATGGGGGAACCGCCATAGTAACCACCACGTGCGTTTCATTATCTTTTATCTTTTCCTTGACTGCTTTTTATGAAGTTGTACTGGGAGCTAGTGCTTGCTAATCTAAAAATTGCTCCATGGATCTTCTCTGAAATGTTTGATGCTTCTTGCACTTAATTAGAATGTTCCTGGGGGTACCACATCATTGCAAGGGTAACAGAGCTCGATTCGCAGATTGGTTCGACCCGGAATTCACTTTTGACTCTGTGTTTGATAGCCTGACTGTAGTTATGCTAATTGTGGTTACATTCGTAAGTAGCTTGGTCCATCTTTATTCTATTTCATATATGTCCGAGGATCCACATAGCCCTCGATTTATGTGTTATTTATCCA

Fln Alignment:

Contig4401___GTAIVTTTCVSLSFIFSLTAFYEVVLGASAC*SKNCSMDLL*NV*CFLHLIRMFLGVPHHCKGNRARFADWFDPEFTFDS----VFDSLTVVMLIVVTFVSSLVHLYSISYMSEDPHSPRFMCYLS
Q37680______________GTAIMTTTCVSFSSILSLIAFYEVALGASAC---------------------------------YLRIAPWISSEM-FDASWGFLFDSLTVVMLIVVTFISSLVHLYSISYMSEDPHSPRFMCYLS

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
209		88		11	0.923564
226		85		14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain