SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4398

Length: 408 nt

UniGene Fasta

>sp_v3.0_unigene4398
ATGGGGACAGTTTGGAGCACTGTGTCATGGCTTCCAACGGGACTATGAACTCTCAAGTTTGTCAAGTTTGCGGGGATAACGTTGGGGTTGATGCAAACGGTGAGCCCTTCGTTGCCTGCCATGACTGTGGCTTTCCTGTTTGTCGTCCCTGCCAGCAGTACGAGAGAGACGAAGCAAGTCAGTGCTGCCTGCATTGCAAAGCTCCGTATCGGCGCTACGAAGGCGGCCCAGCTGATGAGGTTGAAGAGAACGGAGATCCCAACTTTGAAAAAGTAGAAGCAACTGACTATGAAGGGGAAGGCTATCGTGTTGATTCATTTAATGATAGTGAGATTAATAATGCTGAAACAAAGGATGGCAACAGCAAGGGCGTGGCATGGAAGGAAAGAGTTGAGAGTTGGAAGTACC

Ace file of the UniGene sp_v3.0_unigene4398

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cellulose synthase catalytic subunit n=3 Tax=Pinaceae RepID=Q5DI95_PINTA	-	-	0.0	99%
FL-Next	tr=Cellulose synthase catalytic subunit; Pinus taeda (Loblolly pine).	-	-	0.0	99%
Sma3	Cellulose synthase	-	-	1.387e-07	-

Source	Gene names
Sma3	CESA5; CesA-4; CesA1; CesA3; CesA4; CesA5; CesA6; CesA7; GSVIVT00028800001; OsI_013725; PHYPADRAFT_105213; PHYPADRAFT_142240; PHYPADRAFT_19793; POPTRDRAFT_418524; POPTRDRAFT_576348; POPTRDRAFT_706420; POPTRDRAFT_821409; POPTRDRAFT_829022; POPTRDRAFT_83580

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	cellulose synthase (UDP-forming) activity	GO:0016760	Molecular Function	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	cellulose biosynthetic process	GO:0030244	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Cellulose synthase	IPR005150	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q5DI95

Fln msg: Distance to subject end: 857 aas, your sequence is shorter than subject: 127 - 984

Fln protein: MASNGTMNSQVCQVCGDNVGVDANGEPFVACHDCGFPVCRPCQQYERDEASQCCLHCKAPYRRYEGGPADEVEENGDPNFEKVEATDYEGEGYRVDSFNDSEINNAETKDGNSKGVAWKERVESWKY

Protein Length: 128

Fln nts: ATGGGGACAGTTTGGAGCACTGTGTC_-_ATGGCTTCCAACGGGACTATGAACTCTCAAGTTTGTCAAGTTTGCGGGGATAACGTTGGGGTTGATGCAAACGGTGAGCCCTTCGTTGCCTGCCATGACTGTGGCTTTCCTGTTTGTCGTCCCTGCCAGCAGTACGAGAGAGACGAAGCAAGTCAGTGCTGCCTGCATTGCAAAGCTCCGTATCGGCGCTACGAAGGCGGCCCAGCTGATGAGGTTGAAGAGAACGGAGATCCCAACTTTGAAAAAGTAGAAGCAACTGACTATGAAGGGGAAGGCTATCGTGTTGATTCATTTAATGATAGTGAGATTAATAATGCTGAAACAAAGGATGGCAACAGCAAGGGCGTGGCATGGAAGGAAAGAGTTGAGAGTTGGAAGTACC

Fln Alignment:

Contig4398___MASNGTMNSQVCQVCGDNVGVDANGEPFVACHDCGFPVCRPCQQYERDEASQCCLHCKAPYRRYEGGPADEVEENGDPNFEKVEATDYEGEGYRVDSFNDSEINNAETKDGNSKGVAWKERVESWK
Q5DI95______________MASNGTMNSQVCQVCGDNVGVDANGEPFVACHDCGFPVCRPCQQYERDEASQCCLHCKAPYRRYEGGPADEVEENGDPNFEKVEATDYEGEGYRVDSFNDSEINNVETKDGNSKGVAWKERVESWK

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
80		33		66	0.997452
224		85		14	0.993533
238	87		12		0.992554
362	80			20	0.995493
363		80	20		0.995493
364	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain