SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4396

Length: 354 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene4396
CGCAACGGCGGCGACGTCGTCAAAGGCAACGTCAACAGAGGTATCGCAGACAAACTAGACCTGTCTGTGTCTGCGCTCCAATACATGATGAATGAATATCCAGGTATTGAAGAAGAGAAAATGCGAGCGGCAATTGGGAAATTTGGTTTGACAGGAAACGGTCAGATTATGCCGATGCAGAATTTATCTGATGGGCAGAGGAGTCGCGTGATTTTTGCATGGCTTGCTTGGAGATTACCACATCTTCTATTGCTAGATGAACCAACTAATCATCTTGACATTGAAACCATTGATTCACTCGCAGAGGCACTGAATGAGTGGGATGGAGGACTTGTTTTGGTTAGCCACGATTTC

Ace file of the UniGene sp_v3.0_unigene4396 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Iron-inhibited ABC transporter (Fragment) n=3 Tax=Pinaceae RepID=C6F6D7_PSEMZ	-	-	6.99949e-42	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Sma3	ABC transporter family protein	-	-	9.84e-09	-

Source	Gene names
Sma3	ABCT1; AT5G60790; At1g64550; At5g60790; B1130E07.4; B1331F11.24; F1N19.11; Fru5_1; GCN3; GSVIVT00006684001; GSVIVT00022186001; MICPUCDRAFT_44200; MICPUCDRAFT_68853; MICPUN_98118; OSTLU_43066; Os08g0564100; Os09g0572400; OsI_09528; OsI_30302; OsI_32485; Os

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3		IPR014778	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Myb-like domain	IPR017877	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G60790.1	ATGCN1, GCN1 ABC transporter family protein chr5:24453760-24455767 REVERSE LENGTH=595	1.4013e-45	81%
RefSeq	Arabidopsis thaliana	NP_200887.1	ABC transporter F family member 1 [Arabidopsis thaliana]	1.4013e-45	81%
RefSeq	Populus trichocarpa	XP_002331473.1	ABC transporter family protein [Populus trichocarpa]	0.0	86%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVC5

Fln msg: Distance to subject end: 38 aas, your sequence is shorter than subject: 118 - 599

Fln protein: RNGGDVVKGNVNRGIADKLDLSVSALQYMMNEYPGIEEEKMRAAIGKFGLTGNGQIMPMQNLSDGQRSRVIFAWLAWRLPHLLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDF

Protein Length: 119

Fln nts: CGCAACGGCGGCGACGTCGTCAAAGGCAACGTCAACAGAGGTATCGCAGACAAACTAGACCTGTCTGTGTCTGCGCTCCAATACATGATGAATGAATATCCAGGTATTGAAGAAGAGAAAATGCGAGCGGCAATTGGGAAATTTGGTTTGACAGGAAACGGTCAGATTATGCCGATGCAGAATTTATCTGATGGGCAGAGGAGTCGCGTGATTTTTGCATGGCTTGCTTGGAGATTACCACATCTTCTATTGCTAGATGAACCAACTAATCATCTTGACATTGAAACCATTGATTCACTCGCAGAGGCACTGAATGAGTGGGATGGAGGACTTGTTTTGGTTAGCCACGATTTC

Fln Alignment:

Contig4396___IADKLDLSVSALQYMMNEYPGIEEEKMRAAIGKFGLTGNGQIMPMQNLSDGQRSRVIFXXXXXXXXXXXXLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDF
A9NVC5______________LADKLELSVSALQYMMNEYPGIEEEKMRAAIGKFGLTGKAQIMPMENLSDGQRSRVIFAWLAWRLPHLLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain