SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4344

Length: 501 nt

UniGene Fasta

>sp_v3.0_unigene4344
GGTCGACATTCGATGCCGTCATAGCGGGATGCATTCCGGTGTTCTTCCACAAGGATTCGGCGTATACACAGTATACGTGGCATCTTCCATCAGACGGGGAGAAGGAGAGAGAAGGGTACTCTGTGTTTATCCCGCAGGACGATGTGGTGGCCAATGTGTCGATCGTGGAGCGAGTGCTGAGTGACGTCAGCCCTGGGCGGGTGAGGGAGATGCAGGAGAAAGTGATGAGTTTGATTCCCCATGTCATTTACACGATGAAGTCGACAACGGGCAATTCAAAGGCGGCGGGGTTGGTCCGGGATGCGTTCGACATCAGCGTGCACAGGGTGTTGGACTCCATTTCTCAGCAGCGGAAGTGGCCAAATATGAGGCGGAGATGAACACTGTAGCGTGCGAAGCCGAGGTCGATGATGTTATTAATATGATCTGTTTCAGCTGTCCAACTGTAATTGTTATTTTTGGGAAATTTCTTTTAAATTTGGTAGGGATCAGTTAGAATGA

Ace file of the UniGene sp_v3.0_unigene4344

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	xyloglucan galactosyltransferase KATAMARI1 [Arabidopsis thaliana] sp\|Q7XJ98.1\|KATAM_ARATH RecName: Full=Xyloglucan galactosyltransferase KATAMARI1; AltName: Full=Protein MURUS 3 gb\|AAO39815.1\| xyloglucan galactosyltransferase [Arabidopsis thaliana] gb\|AAZ	-	-	2.0e-21	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%

Source	Gene names
Sma3	AT2G20370; At2g20370; F11A3.8; GSVIVT00028497001; KAM1; LOC_Os03g05110; LOC_Os10g32080; LOC_Os10g32110; MUR3; OSJNBa0013H08.11; OSJNBa0013H08.8; OSJNBb0011A08.3; OSJNBb0011A08.6; Os03g0144800; Os10g0458900; OsI_09988; OsI_33901; OsI_33902; OsJ_09385; OsJ_

Source	GOs	Term	Type	Identity
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	integral to Golgi membrane	GO:0030173	Cellular Component	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	beta-lactamase activity	GO:0008800	Molecular Function	-
Sma3	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	-
Sma3	unidimensional cell growth	GO:0009826	Biological Process	-
Sma3	salicylic acid mediated signaling pathway	GO:0009863	Biological Process	-
Sma3	xyloglucan biosynthetic process	GO:0009969	Biological Process	-
Sma3	endomembrane system organization	GO:0010256	Biological Process	-
Sma3	antibiotic catabolic process	GO:0017001	Biological Process	-
Sma3	fucose biosynthetic process	GO:0042353	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Beta-lactamase, class-B, conserved site	IPR001018	-	0.0	-
Sma3	Exostosin-like	IPR004263	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G20370.1	KAM1, MUR3 Exostosin family protein chr2:8792355-8794214 FORWARD LENGTH=619	4.0e-26	48%
RefSeq	Arabidopsis thaliana	NP_179627.2	xyloglucan galactosyltransferase KATAMARI1 [Arabidopsis thaliana]	6.0e-26	48%
RefSeq	Populus trichocarpa	XP_002301846.1	glycosyltransferase, CAZy family GT47 [Populus trichocarpa]	1.0e-27	52%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NT31

Fln msg: your sequence is shorter than subject: 126 - 155

Fln protein: STFDAVIAGCIPVFFHKDSAYTQYTWHLPSDGEKEREGYSVFIPQDDVVANVSIVERVLSDVSPGRVREMQEKVMSLIPHVIYTMKSTTGNSKAAGLVRDAFDISVHRVLDSISQQRKWPNMRRR*

Protein Length: 127

Fln nts: GGTCGACATTCGATGCCGTCATAGCGGGATGCATTCCGGTGTTCTTCCACAAGGATTCGGCGTATACACAGTATACGTGGCATCTTCCATCAGACGGGGAGAAGGAGAGAGAAGGGTACTCTGTGTTTATCCCGCAGGACGATGTGGTGGCCAATGTGTCGATCGTGGAGCGAGTGCTGAGTGACGTCAGCCCTGGGCGGGTGAGGGAGATGCAGGAGAAAGTGATGAGTTTGATTCCCCATGTCATTTACACGATGAAGTCGACAACGGGCAATTCAAAGGCGGCGGGGTTGGTCCGGGATGCGTTCGACATCAGCGTGCACAGGGTGTTGGACTCCATTTCTCAGCAGCGGAAGTGGCCAAATATGAGGCGGAGATGA___ACACTGTAGCGTGCGAAGCCGAGGTCGATGATGTTATTAATATGATCTGTTTCAGCTGTCCAACTGTAATTGTTATTTTTGGGAAATTTCTTTTAAATTTGGTAGGGATCAGTTAGAATGA

Fln Alignment:

Contig4344___STFDAVIAGCIPVFFHKDSAYTQYTWHLPSDGEKEREGYSVFIPQDDVVANVSI--VERVLSDVSPGRVREMQEKVMSLIPHVIYTMKSTTGNSKAAGLVRDAFDISVHRVLDSISQQRKW
A9NT31______________STFDALIAGCIPVFFRRDSAYEQYTWHLPSDPET----YSVFIAEERMVNSRKALKIEDVLSSYSQEKIRKMREKIVEIMPSLLYMNFAEKDGGEI--FPRDAFDLSIEGMLRKVMSSRFW

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
137	16		83		0.994512
146		66		33	1.0
199	33		66		1.0
224	81		18		0.999994
228	81		18		0.999994
245			18	81	0.999994
275	36	63			1.0
285			83	16	0.999991
286		83		16	0.999991
300		66		33	1.0
319		33	66		1.0
390		37		62	1.0
394	37		62		1.0
425	75	25			1.0
426		37		62	1.0
440		37		62	1.0
443	12	87			0.992554
444		87		12	0.992554
445	14			85	0.993533
446	28		28		1.0
449		42	14		1.0
451	33			16	1.0
453		33		66	1.0
473		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain