SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4324

Length: 383 nt

UniGene Fasta

>sp_v3.0_unigene4324
ATGGGGACGTTCTTGGCTTATCAATATCTATAAGTGCAGTGTGGGCAGAGTGGGGAGTGTGCAAAGCAGATCCACTTCCGGAAAATCCACTTGCCTATTCTTTCAGTCTTTCAGGTTGTTTCCCAAGAAATGTTAGAATTTATGCAAGAATTACGTAAGGTTGTAGCAGTGGGAGTTGTAGGTGGCTCAGATCTTGCAAAAATAACTGAGCAGCTTGGAAAAACTGTTATCTCCGACTATGATTATGTATTTTCAGAGAATGGCCTTGTTGCTCACAAAGGTAGCAAAATGATTGGTAATCAGAGCTTTAAAGCATTCCTTGGAGATGAAAAGCTGAAGGAGTTCATCAATTTTACACTTCATTACATTGCTGACTTGGATAT

Ace file of the UniGene sp_v3.0_unigene4324

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phosphomannomutase n=3 Tax=Glycine max RepID=PMM_SOYBN	-	-	3.0e-34	81%
FL-Next	sp=Phosphomannomutase; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	81%
Sma3	Phosphomannomutase	-	-	4.825e-28	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphomannomutase.	EC:5.4.2.8	-	1.261e-30	-

Source	KEGGs	Term	e value	Identity
Sma3	Fructose and mannose metabolism	00051	1.261e-30	%
Sma3	Amino sugar and nucleotide sugar metabolism	00520	1.261e-30	%
Sma3	Metabolic pathways	01100	1.261e-30	%
Sma3	Biosynthesis of secondary metabolites	01110	1.261e-30	%

Source	Gene names
Sma3	At2g45790; CHLREDRAFT_350; F4I18.23; GSVIVT00026780001; H0124B04.12; MICPUCDRAFT_13873; MICPUN_72061; MtrDRAFT_AC148817g5v2; OSTLU_39943; OsI_017323; OsI_17966; Ot01g01540; PHYPADRAFT_234483; PMM; POPTRDRAFT_748018; POPTRDRAFT_790982; POPTRDRAFT_823949; R

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	phosphomannomutase activity	GO:0004615	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	mannose biosynthetic process	GO:0019307	Biological Process	-
Sma3	L-ascorbic acid biosynthetic process	GO:0019853	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Eukaryotic phosphomannomutase	IPR005002	-	0.0	-
Sma3	HAD-superfamily hydrolase, subfamily IIB	IPR006379	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G45790.1	ATPMM, PMM phosphomannomutase chr2:18855876-18857753 FORWARD LENGTH=246	5.0e-39	76%
RefSeq	Arabidopsis thaliana	NP_182103.1	phosphomannomutase [Arabidopsis thaliana]	7.0e-39	76%
RefSeq	Populus trichocarpa	XP_002334663.1	predicted protein, partial [Populus trichocarpa]	5.04467e-44	83%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q1W376

Fln msg: Distance to subject end: 134 aas, your sequence is shorter than subject: 84 - 247

Fln protein: MLEFMQELRKVVAVGVVGGSDLAKITEQLGKTVISDYDYVFSENGLVAHKGSKMIGNQSFKAFLGDEKLKEFINFTLHYIADLD

Protein Length: 85

Fln nts: ATGGGGACGTTCTTGGCTTATCAATATCTATAAGTGCAGTGTGGGCAGAGTGGGGAGTGTGCAAAGCAGATCCACTTCCGGAAAATCCACTTGCCTATTCTTTCAGTCTTTCAGGTTGTTTCCCAAGAA_-_ATGTTAGAATTTATGCAAGAATTACGTAAGGTTGTAGCAGTGGGAGTTGTAGGTGGCTCAGATCTTGCAAAAATAACTGAGCAGCTTGGAAAAACTGTTATCTCCGACTATGATTATGTATTTTCAGAGAATGGCCTTGTTGCTCACAAAGGTAGCAAAATGATTGGTAATCAGAGCTTTAAAGCATTCCTTGGAGATGAAAAGCTGAAGGAGTTCATCAATTTTACACTTCATTACATTGCTGACTTGGATAT

Fln Alignment:

Contig4324___QVVSQEMLEFMQELRKVVAVGVVGGSDLAKITEQLGKTVISDYDYVFSENGLVAHKGSKMIGNQSFKAFLGDEKLKEFINFTLHYIADLD
Q1W376______________KVVTPEMLTFMQELRKVVTVGVVGGSDLIKISEQLGSTVTNDYDYVFSENGLVAHKEGKLIGTQSLKSFLGEEKLKEFINFTLHYIADLD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain