SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4305

Length: 1634 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene4305

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DUF1664 domain containing protein	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF1664	IPR012458	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G04960.2	Protein of unknown function (DUF1664) chr1:1408021-1410424 REVERSE LENGTH=334	45%
RefSeq	Arabidopsis thaliana	NP_563723.1	uncharacterized protein [Arabidopsis thaliana]	45%
RefSeq	Populus trichocarpa	XP_002302850.1	predicted protein [Populus trichocarpa]	50%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKN1

Fln msg:

Fln protein: MATRLLILVGAGLTGSIVLKDGRLSDILSDLQGLLVKQAGAGESSNNGSDNSAAVASQVRRLAQEVRELAQSRSITVLNGNSGQSGNLSSLVVPVAAVGAMGYCYMWWKGWSFSDWMYVTKRNIANVTASFNKQLDQVSSALAAAKKHLTQRLENVDAKLDEQKEISKLIKNEVFEVRGDLTQIGFDIDAIQKMVSGLEGKIVTLEDKQDFANAGVWYLCQFVGGVKDGSMPQFIQDFPARARIERPAPQFTDGNSLKGLQYIADTIQSGTVDQTNVNAILQNDITISANKTIRKEPSN*

Protein Length: 301

Fln nts: ATGGGGTTCACACGGAGGGAGGGACGGAGGCAGGCAGGGCGGAGGTAGTTTTTGATAAATCCAGGGGCGGCTGCAGGTGAGCGACG_-_ATGGCTACCAGGCTATTGATCCTTGTGGGCGCAGGTCTGACCGGATCTATTGTTTTAAAGGATGGCCGCTTATCTGATATCCTTTCAGATCTCCAGGGACTACTGGTAAAGCAAGCAGGTGCAGGAGAATCATCCAATAATGGTTCAGATAACTCTGCTGCTGTTGCTTCTCAGGTGCGTCGTCTGGCACAGGAAGTAAGAGAGCTGGCTCAATCGAGATCAATAACAGTTCTTAATGGGAACTCCGGTCAAAGTGGTAACCTGTCAAGTCTAGTAGTGCCAGTTGCTGCAGTGGGGGCCATGGGCTACTGCTATATGTGGTGGAAAGGATGGTCATTCTCAGATTGGATGTATGTAACCAAGCGTAACATCGCAAATGTTACTGCAAGCTTTAACAAACAGTTGGATCAAGTTTCTTCAGCTCTTGCTGCGGCAAAAAAGCACTTGACCCAGAGGCTTGAAAATGTGGATGCAAAGCTAGATGAGCAAAAGGAAATATCAAAATTAATCAAGAATGAGGTATTTGAAGTGCGTGGAGACCTTACACAGATTGGTTTTGACATAGATGCAATTCAAAAAATGGTTTCTGGCTTGGAAGGGAAGATTGTTACATTAGAAGATAAACAGGATTTTGCAAATGCTGGTGTATGGTATCTTTGCCAATTTGTGGGAGGAGTGAAAGATGGATCCATGCCACAATTTATACAGGACTTCCCAGCAAGAGCTCGAATAGAACGTCCAGCCCCTCAGTTCACTGATGGTAACAGTTTGAAGGGCCTCCAGTACATCGCAGACACAATTCAGTCAGGGACTGTTGACCAAACAAATGTAAATGCAATTTTACAGAATGACATTACTATCTCTGCCAACAAAACAATTCGAAAGGAGCCGTCAAATTAG___AAGGATCACATACAACAAGTATTATGCTGTTTGAATGAGCCTGTGTTGAAGGCTGGACTGAAGATAGAAATATTTGCTCAAGGTACATTTGGCTACTGCAGTTAACAACAGATATATTCGTAGATAAGAAAATCAAGGGGATTCAAAGTTTATCACAGCTTTCGTATGTTGTGATCAGGACCATCTCTATTAAGTTGATTCAAGCTGGTTAGGTTGATTTTAATGTTCTATTATATTCTGCTTGAGCACTATGAAGGGCATATCATTTTAGCGCAAAGAGTCGACTGATAAAAACATTGAACGCCAGTGATAGTTAGCATTTGAAGATCCCAGGGCTTTATTTAACAGGGTTTGTAAACCTGAACTGCTTAAGCTTACCATGTTGGTTGTTTATAAGACAGATGGTGTTTTTATGTTGCTTTTATATAGTATAACATTGCAATCTGAAAAAGATGTGAAATATCTGATCCCCAAATGGTTTTATCCTTGGCTTGATACCAACATCAATTTATTGTATGTTGCAACAAATCTGAAATTTCTCTTAGGGTCTACTATTTCCAGTTGAAAAGAGGCAGGGTGCGCACTGTACACTTTGAGTTTTGCTGATCCATCTCAGAAATTAATAAATCACTACCAAATATTGAAGGA

Fln Alignment:

Contig4305___MATRLLILVGAGLTGSIVLKDGRLSDILSDLQGLLVKQAGAGESSNNGSDNSAAVASQVRRLAQEVRELAQSRSITXXXXXXXXXXXXXXXXXPVAAVGAMGYCYMWWKGWSFSDWMYVTKRNIANVTASFNKQLDQVSSALAAAKKHLTQRLENVDAKLDEQKEISKLIKNEVFEVRGDLTQIGFDIDAIQKMVSGLEGKIVTLEDKQDFANAGVWYLCQFVGGVKDGSMPQFIQDFPARARIERPAPQFTDGNSLKGLQYIADTIQSGTVDQTNVNAILQNDITISANKTIRKEPSN
B8LKN1______________MATRLLILVGAGLTGSVVLKDSRLSDILSDLQGLLRKQAGAGESSNSGSDNSAAVASQVRRLAQEVRELAASRSITVLNGNSGPSGNLSCLVVPVAALGAMGYCYMWWKGWSFSDWMYVTKRNIANVTASFNKQLDQVSSVLAAAKKHLTQRLENVDAKLDEQKEISKLIKDEVFEVRGDLTQIGFDIDAIQKMVSGLEGKIVTLEDKQDFANAGVWYLCQFVGGVKDGSVPKFIQDFPAKARIERPAPQFTDANSLKGLQYIADTIQSGTVDKTNVNAILQNDITVSASKTIQKEPSN

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
922		83		16	0.994512
936	16		83		0.994512
943		85		14	0.993533
944			14	85	0.993533
945	85		14		0.993533
946			14	85	0.993533
1164	5		94		0.9982
1238		6		93	0.999153
1382	78		21		1.0
1397		24		75	1.0
1398		21		78	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain