SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4229

Length: 2453 nt

UniGene Fasta

>sp_v3.0_unigene4229
GTGTGCATATGATGTAAATGGAACGGCGATCCTAACGACACTCGAAATAGATTCAATGCTGTTTCGCGGAGGAACATCAAAGACGCGAAGCCGCAGAGAGGAACAGAGGCTTTAGAGGCCCGCGTCTTATTTATCGTTACGACAGGCGTCCCATTCTCTTTCTTTGCTCTTGTGCCACCAACAGCCCCTCGAAAATATCCATTACCCGTGGGGTGCTTTGAGGGGAAGCAGAGCTGTTTGTGGATTTTATATGGCGACCAATGGCTTTGAAGTAGAAGAAGAGTTCCCCTACAATGGAGGAGGGGAGTCCCCTGCTCCCAGGCAGCAGGACTACGATTTTCTATCGCCCCGCCATTCCAACGACAATGGAGACTTTTACAAGGGTGATTCACGTGATTCTAATTGGGGGAAGGAAAGGAGTCATGATAAAGAAAAGAGTCGCGATAAAGATCGTGATAGAGATCGGGAAAGGAGGCATAAAGATGAAAGGGTGGAATCTAGTCATGATAGACATTCAAGAAGCGAGAGGGATAAAAGCCATGGTAGAGAAAGAAGTCATGATCAACATCGTCATAGGAGTCATGGAAGAAGTCGAGATCGGGATAGGCGCAGTTATGATCGTGAGCGTGGCCATGACCGTGGTCGTGAAAGACGACATAGACACAGGTCTCGGTCTCGTTCAAGTGGAAGGTCAGGGAGCTATTCTCGGAGACGTTCTCACTCAAGATCCATCTCGAGAGAGACTAGAAGAAAGCGCACATCTGGTTTTGACATGGTTCCGCCAGGTGCAGCCATAGTTGCAGGTGCTGGAGCTCCGGGCATAGTTCCTGGAGTTTCTCAACCAGTGCCTGGAGTGTTCCCGATGGTGCCATTTGCAAATGCACAGTTTGGAGTTTCTAATATGGCAGTGCAAGCAATGGCCCAACAGGCCACCAGACATGCCCGCAGAGTTTATGTTGGAGGCTTACCTCCTCTAGAAAATGAGCAGACTATTGCAACATTTTTCAGTCAAGTAATGGCTGCAATAGGAGGAAACACTGCTGGGCCAGGAGATGCTGTTGTGAATGTGTATATCAATCATGAAAAGAAATTTGCCTTTGTGGAGATGAGGACTGTTGAGGAGGCTAGCAATGCAATGGCTCTTGATGGGATACTATTTGAGGGTGCTCCAGTAAGAGTACGAAGGCCGACTGATTACAATCCCTCAATGGCAGCTGCCCTTGGTCCAAGTCAACCAAGTCCTCATCTTAACCTGGCAGCTGTGGGACTTACTCCAGGGGCAACTGGTGGTGCTGATGGGCCAGATAGAGTATTTGTTGGAGGCTTGCCTTACTATTTTACTGAGGCCCAGATAAAGGAGCTTTTAGAAGCCTTTGGGCCTCTTCGTGGATTTGATCTGGTAAAGGATCGAGATACAGGAAACTCCAAAGGCTATGGGTTCTGCGTCTATCAAGATCCAGGTGTTACAGATATTGCATGTGCCGCTCTAAACGGATTGAAGATGGGTGACAAGACCTTAACAGTGCGGCGTGCAACAGCCAGTGGCCAGGCAAGGCCTGATCAATATAGTCTCTTTCCGGAAGCACAGCAACCATTAACGTTTCAGAATCTGGCTTTGCAAGCAACAAATGGTACCAATATGGGATTACTAAGTGGAGCTGCAGAGTCTCCCACGAAGGTTCTTTGCCTTACTCAGGCAGTTAATCCAGATGAGTTACTAGATGATCAAGAATTTGAAGACATTTATGACGATATGAAGGAAGAATGTGGCAAACATGGTGAGATTACCAAATTAGTGATACCTCGCCCTAAATCAACTGGAGAAGAGGTTCCTGGTGTTGGAAAGGTGTTTGTGGAGTATGCCAATACACAAAGTTCAGCTAAGGCCAGGGCATCATTGCATGGAAGGAAATTTGGAGGCAATGTTGTTGTAGCTGTTTATTACCCAGAAGACAAGTTTTCTGCAGGACAATGGTGATTGATCTTGTAAAATAGCAGAAGCACTATCTCCATCTCTACTGATCTTTCTGGAATGCATTCACATGCATATTTTAAACAATATGAAGCAGAGGGTGGGGCTTGAGTACTGGAAAAGGAACCTGATCACCATGAGAAATATTCCAGTGGCTTTGTAGAGAACTGTTGTTCACAACGTATGCACTATCAATACAGGTTCCAGTATCTGCTAGTGATATTCTTTTGTACTGAAGATCTGTGAAAACTTCTGAAAACTTGGAATAGGCTTAAAGATTAATACATATATTTGTCCTGTATAGAGCAATATAACCAGAATGCAAGAATCAATTGTACTTCTTTTCGTTTGCTTTTTATTTGCGTAGTCCATATTCTTCAATGTACACTCTTAGGGATATTCGGATTTTTATGCACAATTATTTGGAGTACTTAGATTCTTATTGAAGGGTTCATTGGGATAAAGTTATTTGCAGAATACT

Ace file of the UniGene sp_v3.0_unigene4229

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1777 multi-domain protein	-	-	1.0e-15	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	27%
Sma3	U2 snRNP auxiliary factor large subunit B	-	-	1.38e-15	-

Source	Gene names
Sma3	11.EGGPLANT.5; 11.PEPPER.10; 11.PETUNIA.4; 11.POTATO.10; 11P.PETUNIA.5; AT4G36690; At1g60830; At1g60900; At4g36690; C7A10.670; CHLREDRAFT_111628; CHLREDRAFT_118550; F23C21.4; GSVIVT00002206001; GSVIVT00010266001; GSVIVT00010267001; GSVIVT00024970001; LOC_

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	NADH dehydrogenase (ubiquinone) activity	GO:0008137	Molecular Function	-
Sma3	mRNA processing	GO:0006397	Biological Process	-
Sma3	RNA splicing	GO:0008380	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-
Sma3	ATP synthesis coupled electron transport	GO:0042773	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	NADH:ubiquinone/plastoquinone oxidoreductase	IPR001750	-	-
Sma3	RNA recognition motif domain, eukaryote	IPR003954	-	-
Sma3	U2 snRNP auxilliary factor, large subunit, splicing factor	IPR006529	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Domain of unknown function DUF1777	IPR013957	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G36690.1	ATU2AF65A U2 snRNP auxilliary factor, large subunit, splicing factor chr4:17294139-17297609 REVERSE LENGTH=573	64%
RefSeq	Arabidopsis thaliana	NP_001190937.1	Splicing factor U2af large subunit A [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002310209.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P1T0

Fln msg: your sequence is longer than subject: 576 - 347

Fln protein: MATNGFEVEEEFPYNGGGESPAPRQQDYDFLSPRHSNDNGDFYKGDSRDSNWGKERSHDKEKSRDKDRDRDRERRHKDERVESSHDRHSRSERDKSHGRERSHDQHRHRSHGRSRDRDRRSYDRERGHDRGRERRHRHRSRSRSSGRSGSYSRRRSHSRSISRETRRKRTSGFDMVPPGAAIVAGAGAPGIVPGVSQPVPGVFPMVPFANAQFGVSNMAVQAMAQQATRHARRVYVGGLPPLENEQTIATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGILFEGAPVRVRRPTDYNPSMAAALGPSQPSPHLNLAAVGLTPGATGGADGPDRVFVGGLPYYFTEAQIKELLEAFGPLRGFDLVKDRDTGNSKGYGFCVYQDPGVTDIACAALNGLKMGDKTLTVRRATASGQARPDQYSLFPEAQQPLTFQNLALQATNGTNMGLLSGAAESPTKVLCLTQAVNPDELLDDQEFEDIYDDMKEECGKHGEITKLVIPRPKSTGEEVPGVGKVFVEYANTQSSAKARASLHGRKFGGNVVVAVYYPEDKFSAGQW*

Protein Length: 577

Fln nts: GTGTGCATATGATGTAAATGGAACGGCGATCCTAACGACACTCGAAATAGATTCAATGCTGTTTCGCGGAGGAACATCAAAGACGCGAAGCCGCAGAGAGGAACAGAGGCTTTAGAGGCCCGCGTCTTATTTATCGTTACGACAGGCGTCCCATTCTCTTTCTTTGCTCTTGTGCCACCAACAGCCCCTCGAAAATATCCATTACCCGTGGGGTGCTTTGAGGGGAAGCAGAGCTGTTTGTGGATTTTAT_-_ATGGCGACCAATGGCTTTGAAGTAGAAGAAGAGTTCCCCTACAATGGAGGAGGGGAGTCCCCTGCTCCCAGGCAGCAGGACTACGATTTTCTATCGCCCCGCCATTCCAACGACAATGGAGACTTTTACAAGGGTGATTCACGTGATTCTAATTGGGGGAAGGAAAGGAGTCATGATAAAGAAAAGAGTCGCGATAAAGATCGTGATAGAGATCGGGAAAGGAGGCATAAAGATGAAAGGGTGGAATCTAGTCATGATAGACATTCAAGAAGCGAGAGGGATAAAAGCCATGGTAGAGAAAGAAGTCATGATCAACATCGTCATAGGAGTCATGGAAGAAGTCGAGATCGGGATAGGCGCAGTTATGATCGTGAGCGTGGCCATGACCGTGGTCGTGAAAGACGACATAGACACAGGTCTCGGTCTCGTTCAAGTGGAAGGTCAGGGAGCTATTCTCGGAGACGTTCTCACTCAAGATCCATCTCGAGAGAGACTAGAAGAAAGCGCACATCTGGTTTTGACATGGTTCCGCCAGGTGCAGCCATAGTTGCAGGTGCTGGAGCTCCGGGCATAGTTCCTGGAGTTTCTCAACCAGTGCCTGGAGTGTTCCCGATGGTGCCATTTGCAAATGCACAGTTTGGAGTTTCTAATATGGCAGTGCAAGCAATGGCCCAACAGGCCACCAGACATGCCCGCAGAGTTTATGTTGGAGGCTTACCTCCTCTAGAAAATGAGCAGACTATTGCAACATTTTTCAGTCAAGTAATGGCTGCAATAGGAGGAAACACTGCTGGGCCAGGAGATGCTGTTGTGAATGTGTATATCAATCATGAAAAGAAATTTGCCTTTGTGGAGATGAGGACTGTTGAGGAGGCTAGCAATGCAATGGCTCTTGATGGGATACTATTTGAGGGTGCTCCAGTAAGAGTACGAAGGCCGACTGATTACAATCCCTCAATGGCAGCTGCCCTTGGTCCAAGTCAACCAAGTCCTCATCTTAACCTGGCAGCTGTGGGACTTACTCCAGGGGCAACTGGTGGTGCTGATGGGCCAGATAGAGTATTTGTTGGAGGCTTGCCTTACTATTTTACTGAGGCCCAGATAAAGGAGCTTTTAGAAGCCTTTGGGCCTCTTCGTGGATTTGATCTGGTAAAGGATCGAGATACAGGAAACTCCAAAGGCTATGGGTTCTGCGTCTATCAAGATCCAGGTGTTACAGATATTGCATGTGCCGCTCTAAACGGATTGAAGATGGGTGACAAGACCTTAACAGTGCGGCGTGCAACAGCCAGTGGCCAGGCAAGGCCTGATCAATATAGTCTCTTTCCGGAAGCACAGCAACCATTAACGTTTCAGAATCTGGCTTTGCAAGCAACAAATGGTACCAATATGGGATTACTAAGTGGAGCTGCAGAGTCTCCCACGAAGGTTCTTTGCCTTACTCAGGCAGTTAATCCAGATGAGTTACTAGATGATCAAGAATTTGAAGACATTTATGACGATATGAAGGAAGAATGTGGCAAACATGGTGAGATTACCAAATTAGTGATACCTCGCCCTAAATCAACTGGAGAAGAGGTTCCTGGTGTTGGAAAGGTGTTTGTGGAGTATGCCAATACACAAAGTTCAGCTAAGGCCAGGGCATCATTGCATGGAAGGAAATTTGGAGGCAATGTTGTTGTAGCTGTTTATTACCCAGAAGACAAGTTTTCTGCAGGACAATGGTGA___TTGATCTTGTAAAATAGCAGAAGCACTATCTCCATCTCTACTGATCTTTCTGGAATGCATTCACATGCATATTTTAAACAATATGAAGCAGAGGGTGGGGCTTGAGTACTGGAAAAGGAACCTGATCACCATGAGAAATATTCCAGTGGCTTTGTAGAGAACTGTTGTTCACAACGTATGCACTATCAATACAGGTTCCAGTATCTGCTAGTGATATTCTTTTGTACTGAAGATCTGTGAAAACTTCTGAAAACTTGGAATAGGCTTAAAGATTAATACATATATTTGTCCTGTATAGAGCAATATAACCAGAATGCAAGAATCAATTGTACTTCTTTTCGTTTGCTTTTTATTTGCGTAGTCCATATTCTTCAATGTACACTCTTAGGGATATTCGGATTTTTATGCACAATTATTTGGAGTACTTAGATTCTTATTGAAGGGTTCATTGGGATAAAGTTATTTGCAGAATACT

Fln Alignment:

Contig4229___RVYVGGLPPLENEQTIATFFSQVMAAIGGNTAGPGDAVVNVY---INHEKKFAFVEMRTVEEASNAMA-LDGILFEGAPVRVRRPTDYNPSMAAALGPSQPSPHLNLAAVGLTPGATGG-ADGPDRVFVGGLPYYFTEAQIKELLEAFGPLRGFDLVKDRDTGNSKGYGFCVYQDPGVTDIACAALNGLKMGDKTLTVRRA
A9P1T0______________KLYVGNLPFDIDSEGLAKMFDE---------SGVVEMVEVIYDRSSGRSRGFAFVTMSTVEEAEAAIKKFNGFEIDGRSLRVNFPEV--PRLQNGRSPAR------------SPSNFGGFVDSPHKVYVGNLAWSVTSETLREALNGKGNVLGAKVIQDRETGRSRGFGFVSFSSEAEVEAAVSEMDGLEVEGRSIRVNVA

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
68			50	50	1.0
1004	20			80	0.995493
1008			80	20	0.995493
1018	25		75		0.996473
1019		25	75		0.996473
1020	25	75			0.996473
1022			75	25	0.996473
1264	87		12		0.992554
1314		14		85	0.993533
2310	90		10		0.90298
2311		88	11		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain