SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4226

Length: 1895 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene4226

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MYB transcription factor [Triticum aestivum]	-	-	0.0	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Sma3	MYB-CC type transfactor	-	-	1.08e-24	-

Source	Gene names
Sma3	APL; AT1G79430; AT4g13640; AT4g28610; At1g79430; At2g01060; At2g01060/F23H14.3; At2g20400; At3g04030; At3g04450; At3g04450/T27C4_10; At3g12730; At3g13040; At3g24120; At4g13640; At4g28610; At5g06800; At5g29000; At5g45580; B0403H10-OSIGBa0105A11.2; CHLREDRA

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	peptidase activity	GO:0008233	Molecular Function	-
Sma3	double fertilization forming a zygote and endosperm	GO:0009567	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Myb DNA-binding domain, plants	IPR006447	-	-
Sma3		IPR012287	-	-
Sma3	Leucine-rich repeat 2	IPR013101	-	-
Sma3		IPR014778	-	-
Sma3	Peptidase M22, glycoprotease, conserved site	IPR017860	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G01060.1	myb-like HTH transcriptional regulator family protein chr2:73456-74902 REVERSE LENGTH=286	72%
RefSeq	Arabidopsis thaliana	NP_178216.1	myb-like HTH transcriptional regulator-like protein [Arabidopsis thaliana]	72%
RefSeq	Populus trichocarpa	XP_002329947.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACF5

Fln msg:

Fln protein: MYQVKKFSTSGMTPQRVQGHQQRGSGPSDVSSNSDGSPVTACGGGSAKQRLRWTTDLHDRFVEAVGQLGGADRATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYVPEFREGEKSDKRKAYEVIPKMDATSGVQITKALEMQMEVQKRLYEQLEVQRQLKLRIEAQGRYLEKIIEEHQTGATKCQAPSSPESSSHFSEELHGNTKGFLRDSEDQAQNDSQLPASRSSGAMTMTSSNISQKVEHPVISSAIMDKQQKIPSFTYSGYDHVSCLANPEFRSPSKRIRVNDSIGQVKQETFAGQSQDQQQLPKKEYQKHLSVHTTGELSSPNYQSRLACSTGHVESPGSVHLSSESQPQHSEGGRYSEEVYQKQSAAKASLGFSPTESQYRIPTYLQSMNSPFLSQSEFSSALDNMDSHQNMPLQARLFQSWM*

Protein Length: 431

Fln nts: GGAGGAATGGAAGGATCAGATTCAGCCATGCCTTGTTCACAAAGCGGAAGACGTTCATGTCTCTGCGCCATCTTTGTTCACGTTAAGTGTGTAACGTCGTGGAAGGGATTCGACCCGTGCAACTGGATTCGTAAAATGCCATTTGATTCTTCTAGCTTTCAAATTATTGCTCCAAAACCTAACAGCACGATTCAAGTTTTACAGGCTTTGCCGAGGTAGATTATGCCAGCAATCATTCCTGCTGCATATCTTCTAGGGC_-_ATGTACCAAGTTAAAAAGTTTTCAACGTCTGGCATGACTCCTCAAAGGGTTCAAGGACACCAGCAAAGGGGATCTGGTCCTTCAGACGTATCTTCTAACTCTGATGGTAGTCCTGTTACGGCATGTGGTGGAGGATCAGCAAAACAACGCTTACGTTGGACGACTGATCTGCATGACCGATTTGTGGAGGCAGTTGGTCAGCTTGGAGGTGCTGACAGAGCTACACCGAAGGGTGTTCTTAGGGTTATGGGTGTTCCAGGCCTCACCATCTATCATGTAAAAAGCCATTTGCAGAAATATCGACTCGCAAAGTATGTACCTGAGTTTCGAGAAGGGGAAAAATCTGATAAGAGAAAAGCCTATGAAGTGATACCGAAGATGGATGCTACATCGGGTGTTCAGATTACGAAGGCGCTTGAAATGCAAATGGAAGTACAGAAGCGATTGTATGAACAACTCGAGGTACAAAGGCAGTTAAAGTTAAGGATTGAGGCTCAGGGAAGGTATTTGGAGAAGATCATAGAGGAACATCAAACAGGTGCTACTAAGTGTCAAGCTCCTTCTTCCCCTGAGTCATCTTCTCATTTCTCAGAGGAACTGCATGGAAATACAAAAGGATTTTTGCGTGATTCTGAAGATCAAGCACAGAATGACTCGCAACTTCCAGCCTCTAGGTCAAGTGGAGCTATGACTATGACATCAAGTAATATTTCTCAAAAGGTTGAACATCCAGTTATATCTTCTGCAATCATGGACAAACAACAGAAGATACCATCATTTACATATAGCGGTTATGATCACGTCTCATGTTTAGCAAACCCAGAGTTTAGGTCACCTTCAAAACGGATAAGAGTGAATGATAGTATAGGACAGGTAAAACAGGAGACTTTTGCAGGTCAATCTCAAGACCAACAACAGTTGCCAAAAAAGGAATACCAGAAACATCTATCTGTTCACACAACTGGAGAATTATCAAGCCCAAATTACCAAAGTAGGCTTGCATGTTCAACTGGCCATGTTGAGTCTCCTGGATCAGTCCATCTTTCCTCTGAATCCCAACCTCAACACTCAGAAGGTGGTCGATATTCTGAAGAAGTTTATCAAAAGCAATCAGCAGCAAAGGCATCTCTGGGATTTTCTCCCACAGAATCCCAATATCGTATTCCAACGTACTTGCAGTCTATGAATTCCCCCTTTCTATCACAGTCTGAGTTTTCTAGTGCTTTGGATAACATGGACAGTCACCAAAACATGCCATTACAAGCTAGACTGTTTCAATCATGGATGTAA___CTCAGTCTGTGTCAGAATTTAAACAGAATGGCCTTGCGATAGCCTATAGGAGGGCTTAAAATGATTAAGTCTGTTGAGCAGAGAATATAGTTATCATAAACATTGCTCTTTCTTTCATAATTCACGCAATTCAAGAGCGTTGATGACATCTGGATAATGGATGGTCCTTATGGATCATTGGTTGAACATAAATGCTTTGTTATAACTTATAAACATCGCCCCTTGTTTAATGGTGCATGAAATGAAGGAACTCTAATGTGATCTAGTAAAGCTTTTATTGTTCTAATGAAAATAGCAGATGCCAGAATTCTTGTTGAAATAAATACTACTAGTGATGTTCTTATTG

Fln Alignment:

Contig4226___MYQVKKFSTSGMTPQRVQGHQQR-GSGPSDVSSNSDGSPVTACGGGSAKQRLRWTTDLHDRFVEAVGQLGGADRATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYVPE-FREGEKSDKRKAYEVIPKMDATSGVQITKALEMQMEVQKRLYEQLEVQRQLKLRIEAQGRYLEKIIEEHQ--TGATK
D5ACF5______________MYNARKYPAVSLMPPRSQGPEQHIASAVPITSNNANCSPVAS--GMASKQRLRWTPELHQRFVDAVTELGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLSKYLPDSMGDGLKSEKKESTDILSNLDAASGVQISEALQMQMEVQKRLHEQIEVQRQLQLRIEAQGKYLQKIIEEQQRLSGALK

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
752		16	83		0.994512
753	16		83		0.994512
754		83		16	0.994512
784	83		16		0.994512
785	50		50		1.0
862	40		60		1.0
1062		75		25	0.996473
1096		66		33	0.997452
1150	25			75	0.996473
1151	25			75	0.996473
1155	75			25	0.996473
1353	83		16		0.994512
1355	83		16		0.994512
1436		12		87	0.992554
1804		83		16	0.994512
1841	80		20		0.995493
1848		75		25	0.996473
1863			25	75	0.996473
1869	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain