SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4219

Length: 1956 nt

UniGene Fasta

>sp_v3.0_unigene4219
CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGCCACGCGAATGCTAAAAGGTAAAGGTTAAAGCCGAGGGGACGAAAGCTTTTAGTTTTGGTGTAAGGCTTATGGCGAGATCGAAGGCAGGTACTAACAGTTAGTTAATTTTCAGAGGAACGGGCCGCGAAGGGGTTAGAGAATTCACATCCCGGCATTCTGCGTTTGTTCAAGGCTTTTCTTTGCGGATCTACGTTTGTAAAATGGCCGCTCTCAAGTATCTGGAAACGCAGAGGGCAGCCCAGCCCGAACTGGCCGAATGGTACAATGCATTGGCTGATCTCTACGAGCGCAAGTTGTGGCACCAACTCACTCTCAAGCTCGAACAGTTCGTAGCCCTCGCAGTTTTTCAGGCTGGTGATGCGCTTATCCAACTATATCACAATTTTATAACAGATTTTGAGACGAAGATCAATCTGCTTAAGCTTGCACATTTTGCTGTTATTGTTTCTCGTCAGTACACAGAAAGGGAAGCTGCTATCAGCTACTTAGAGGGAGTAATCGAGAAGCTTCGTGCCACAAGGGATACACGAATTGAGGAACCAATACTATATGTTAGAATGCAAATAGCTGCATTAAAACTTGAACAAAGTGAACAGAAAGAATGTAAAAAGCTACTAGATGAGGGCAAACATACACTGGACAGTATGACTGATATAGATCCTTCTGTTTATGCAAGCTACCATTGGGTCTCATCTCAGTATCATAAGTCGAGACAAGAATTTGCTGAGTTTTATAAAAGTGCTCTTCTGTTTCTGGCTTATACTACTGTAGAGTCTCTTTCAGAACCGTTCAAGCTGGATTTAGCATTTGACTTGTCTCTTGCTGCATTACTTGGAGATAACATATACAACTTTGGAGAACTGTTGGCACATCCAATTGTGAAGAGTCTTCTGGGTACGAGTGTAGAGTGGCTATATTATATTTTACAAGCATTTAATGCTGGTGACTTAGCTCGGTATCAAGAACTATGTCATGTTCATAGGGATGCTCTCAATGCACAACCGGCGCTTGTAGAGAATGAGAAAAAGTTGCTGGAAAAGATTAATATCCTATGCTTGATGGAGATCATATTTAGCCGTCCTTCAGAAGATAGAACAGTCCCACTGAGTATCATTGCAGACCGAACCAAATTATCAATTGAAGATGTTGAGTATCTCCTCATGAAAAGCCTTTCTGTTCATTTAATTGAAGGGGTTATTGACCAAGTTGATGCGACTGTGCATGTATCTTGGGTACAGCCTAGAGTGCTGGGAATACCCCAGATCAAATCCTTAAGGGATAAGCTTGACAATTGGCTGCAAAAAGTCCACACAACTCTGTTGGCTGTTGAAGCTGAAACCCCAGATTTAGTGGCATCATGATTGAAAAGTAAAGCGTAGACGAAGGCATCAAATGAAAGCATGGCCATTTTAAGTTGTTGACAATTGTCAATGAGTCTTCCATGGAGATGCGATAATTTAACCCCATCTTTTCAGCCGTCTGCATTATTGTTGTTAGCTTTTCAAAGATAGTAATTTGTGCCTTTCTTTGAGGTCAGAGAATTCATGCAGCAATTTGTCCTAACAGAGCATTTGTTTTCAGCACTGTCAAAGAAAGACTCAGTTTGCTGATTTTTGTAGGGATCGAATCTGTAACTTTGCTGGCCATGAATATTTCACTGAGATCAGTATAGTCCATCTTTTGTGTGTTTGAATTTCAATTTGATAAGAGATGTAATATTTGGGAACGAATATTATTCTGTAGCTGCTAATAATTCCAGGATATTTAATGCTACTCCTTATTAGTTTTATATTTTTGGAATTAAAAAATCTTGGTCTTTGATTCCTTCCACTTGTTTACTCGTGATCAAATTCTATTACCAATTGAAAATTCTATTACCTACATTTTTCATTTTTCTGGTAAGGACAAATCATTTTG

Ace file of the UniGene sp_v3.0_unigene4219

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	26S proteasome regulatory subunit N9 [Arabidopsis thaliana] dbj\|BAC42409.1\| unknown protein [Arabidopsis thaliana] gb\|AAP86669.1\| 26S proteasome subunit RPN9b [Arabidopsis thaliana] gb\|AEE84124.1\| 26S proteasome regulatory subunit N9 [Arabidopsis thaliana	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Sma3	Predicted protein	-	-	-

Source	Gene names
Sma3	POPTRDRAFT_826642;

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteasome component (PCI) domain	IPR000717	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G19006.1	Proteasome component (PCI) domain protein chr4:10409349-10411347 REVERSE LENGTH=386	80%
RefSeq	Arabidopsis thaliana	NP_680721.2	26S proteasome regulatory subunit N9 [Arabidopsis thaliana]	80%
RefSeq	Populus trichocarpa	XP_002326753.1	predicted protein [Populus trichocarpa]	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADZ2

Fln msg: your sequence is longer than subject: 387 - 100

Fln protein: MAALKYLETQRAAQPELAEWYNALADLYERKLWHQLTLKLEQFVALAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYTEREAAISYLEGVIEKLRATRDTRIEEPILYVRMQIAALKLEQSEQKECKKLLDEGKHTLDSMTDIDPSVYASYHWVSSQYHKSRQEFAEFYKSALLFLAYTTVESLSEPFKLDLAFDLSLAALLGDNIYNFGELLAHPIVKSLLGTSVEWLYYILQAFNAGDLARYQELCHVHRDALNAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTVPLSIIADRTKLSIEDVEYLLMKSLSVHLIEGVIDQVDATVHVSWVQPRVLGIPQIKSLRDKLDNWLQKVHTTLLAVEAETPDLVAS*

Protein Length: 388

Fln nts: CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGCCACGCGAATGCTAAAAGGTAAAGGTTAAAGCCGAGGGGACGAAAGCTTTTAGTTTTGGTGTAAGGCTTATGGCGAGATCGAAGGCAGGTACTAACAGTTAGTTAATTTTCAGAGGAACGGGCCGCGAAGGGGTTAGAGAATTCACATCCCGGCATTCTGCGTTTGTTCAAGGCTTTTCTTTGCGGATCTACGTTTGTAAA_-_ATGGCCGCTCTCAAGTATCTGGAAACGCAGAGGGCAGCCCAGCCCGAACTGGCCGAATGGTACAATGCATTGGCTGATCTCTACGAGCGCAAGTTGTGGCACCAACTCACTCTCAAGCTCGAACAGTTCGTAGCCCTCGCAGTTTTTCAGGCTGGTGATGCGCTTATCCAACTATATCACAATTTTATAACAGATTTTGAGACGAAGATCAATCTGCTTAAGCTTGCACATTTTGCTGTTATTGTTTCTCGTCAGTACACAGAAAGGGAAGCTGCTATCAGCTACTTAGAGGGAGTAATCGAGAAGCTTCGTGCCACAAGGGATACACGAATTGAGGAACCAATACTATATGTTAGAATGCAAATAGCTGCATTAAAACTTGAACAAAGTGAACAGAAAGAATGTAAAAAGCTACTAGATGAGGGCAAACATACACTGGACAGTATGACTGATATAGATCCTTCTGTTTATGCAAGCTACCATTGGGTCTCATCTCAGTATCATAAGTCGAGACAAGAATTTGCTGAGTTTTATAAAAGTGCTCTTCTGTTTCTGGCTTATACTACTGTAGAGTCTCTTTCAGAACCGTTCAAGCTGGATTTAGCATTTGACTTGTCTCTTGCTGCATTACTTGGAGATAACATATACAACTTTGGAGAACTGTTGGCACATCCAATTGTGAAGAGTCTTCTGGGTACGAGTGTAGAGTGGCTATATTATATTTTACAAGCATTTAATGCTGGTGACTTAGCTCGGTATCAAGAACTATGTCATGTTCATAGGGATGCTCTCAATGCACAACCGGCGCTTGTAGAGAATGAGAAAAAGTTGCTGGAAAAGATTAATATCCTATGCTTGATGGAGATCATATTTAGCCGTCCTTCAGAAGATAGAACAGTCCCACTGAGTATCATTGCAGACCGAACCAAATTATCAATTGAAGATGTTGAGTATCTCCTCATGAAAAGCCTTTCTGTTCATTTAATTGAAGGGGTTATTGACCAAGTTGATGCGACTGTGCATGTATCTTGGGTACAGCCTAGAGTGCTGGGAATACCCCAGATCAAATCCTTAAGGGATAAGCTTGACAATTGGCTGCAAAAAGTCCACACAACTCTGTTGGCTGTTGAAGCTGAAACCCCAGATTTAGTGGCATCATGA___TTGAAAAGTAAAGCGTAGACGAAGGCATCAAATGAAAGCATGGCCATTTTAAGTTGTTGACAATTGTCAATGAGTCTTCCATGGAGATGCGATAATTTAACCCCATCTTTTCAGCCGTCTGCATTATTGTTGTTAGCTTTTCAAAGATAGTAATTTGTGCCTTTCTTTGAGGTCAGAGAATTCATGCAGCAATTTGTCCTAACAGAGCATTTGTTTTCAGCACTGTCAAAGAAAGACTCAGTTTGCTGATTTTTGTAGGGATCGAATCTGTAACTTTGCTGGCCATGAATATTTCACTGAGATCAGTATAGTCCATCTTTTGTGTGTTTGAATTTCAATTTGATAAGAGATGTAATATTTGGGAACGAATATTATTCTGTAGCTGCTAATAATTCCAGGATATTTAATGCTACTCCTTATTAGTTTTATATTTTTGGAATTAAAAAATCTTGGTCTTTGATTCCTTCCACTTGTTTACTCGTGATCAAATTCTATTACCAATTGAAAATTCTATTACCTACATTTTTCATTTTTCTGGTAAGGACAAATCATTTTG

Fln Alignment:

Contig4219___MEIIFSRPSEDRTVPLSIIADRTKLSIEDVEYLLMKSLSVHLIEGVIDQVDATVHVSWVQPRVLGIPQIKSLRDKLDNWLQKVHTTLLAVEAETPDLV
D5ADZ2______________MEIIFSRPSEDRTVPLSIIADRTKLSIEDVEYLLMKSLSVHLIEGVIDQVDGTVHVSWVQPRVLGIPQIKSLRDKLDNWLQKVHTTLLAVEAETPDLV

SNPs (tot: 6)

Position	C %	G %	T %	Probability
266		66	33	0.997452
333	42		57	1.0
487	75		25	0.996473
548		20	80	0.995493
1864	88	11		0.923564
1866	11		88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain