SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4213

Length: 1370 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene4213

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PIN-like auxin efflux carrier n=1 Tax=Picea abies RepID=B5TXD0_PICAB	-	-	0.0	70%
FL-Next	tr=PIN-like auxin efflux carrier; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	70%
Sma3	Auxin efflux carrier component	-	-	2.25609e-43	-

Source	Gene names
Sma3	AEC1; AEC2; AEC3; AEH1; AEH2; AGR; AGR1; AT1G23080; At1g23080; At1g70940; At1g73590; At1g77110; At2g01420; At5g15100; At5g16530; At5g57090; CS-PIN1; EIR1; F15H11.14; F22K20.18; F2G14_220; F2I9.4; F6D5.2; GSVIVT00014302001; GSVIVT00017824001; GSVIVT0002088

Source	GOs	Term	Type	Identity
Sma3	lytic vacuole	GO:0000323	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	auxin efflux carrier complex	GO:0009921	Cellular Component	-
Sma3	basal plasma membrane	GO:0009925	Cellular Component	-
Sma3	cell surface	GO:0009986	Cellular Component	-
Sma3	vesicle membrane	GO:0012506	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	lateral plasma membrane	GO:0016328	Cellular Component	-
Sma3	apical part of cell	GO:0045177	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	auxin efflux transmembrane transporter activity	GO:0010329	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	pattern specification process	GO:0007389	Biological Process	-
Sma3	gravitropism	GO:0009630	Biological Process	-
Sma3	photomorphogenesis	GO:0009640	Biological Process	-
Sma3	response to ethylene stimulus	GO:0009723	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	auxin polar transport	GO:0009926	Biological Process	-
Sma3	longitudinal axis specification	GO:0009942	Biological Process	-
Sma3	positive gravitropism	GO:0009958	Biological Process	-
Sma3	xylem and phloem pattern formation	GO:0010051	Biological Process	-
Sma3	regulation of root meristem growth	GO:0010082	Biological Process	-
Sma3	leaf formation	GO:0010338	Biological Process	-
Sma3	leaf shaping	GO:0010358	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-
Sma3	root hair initiation	GO:0048766	Biological Process	-
Sma3	root hair elongation	GO:0048767	Biological Process	-
Sma3	adventitious root development	GO:0048830	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Auxin efflux carrier	IPR004776	-	-
Sma3	Mpp10 protein	IPR007151	-	-
Sma3	Auxin efflux carrier, plant type	IPR014024	-	-
Sma3	Superoxide dismutase, copper/zinc, binding site	IPR018152	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G70940.1	PIN3, ATPIN3 Auxin efflux carrier family protein chr1:26743170-26745871 FORWARD LENGTH=640	61%
RefSeq	Arabidopsis thaliana	NP_177250.1	auxin efflux carrier component 3 [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002312436.1	auxin efflux carrier component [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B5TXD0

Fln msg: your sequence is shorter than subject: 309 - 699

Fln protein: PQQQQQQKLNDAAKELHMFVWSSSASPVSEGNQLHVFGGTHELGGAPPDNNAKSDPNGKEVRTVDQHPVNGGKGLHETSSGSYDEYARGHFSPGKKAMVSHGEESITRDLEAASPNSKLAPGCSLDQYDEKSHVEARRMSMPPASVMTRLILIMVWRKLIRNPNTYSSALGLIWSFVSFRFNVTMPKLVHGSIAILSDAGLGMAMFSLGLFMALQPRIIACGKSVAGFAMAVRFLTGPAVMAAASIAVGLRGSLLHVAIVQAALPQGIVPFVFAKEYNVHPEILSTAVIFGMLIALPITLIYYILLGL*

Protein Length: 310

Fln nts: CACCACAGCAACAACAACAACAGAAGCTCAACGATGCTGCTAAGGAGCTTCATATGTTTGTGTGGAGCTCCAGTGCCTCTCCTGTATCAGAGGGAAACCAGCTTCATGTTTTCGGTGGAACACATGAGCTTGGAGGAGCCCCACCTGATAACAATGCTAAAAGTGATCCAAATGGGAAGGAAGTACGCACGGTTGATCAGCATCCTGTCAATGGAGGCAAAGGCTTACACGAGACTTCCAGTGGATCTTACGACGAATATGCTCGTGGGCATTTCAGTCCAGGAAAAAAGGCAATGGTATCTCATGGAGAGGAATCCATAACTCGAGATCTGGAAGCAGCCAGCCCGAATTCCAAACTAGCTCCTGGCTGTTCTCTGGATCAATATGACGAGAAAAGCCATGTTGAAGCTAGGAGGATGAGTATGCCTCCTGCCAGTGTCATGACTAGGCTAATTCTCATAATGGTGTGGAGAAAACTCATAAGAAATCCTAACACTTATTCCAGCGCCTTGGGTCTTATTTGGTCCTTTGTCTCTTTCAGGTTCAATGTTACAATGCCGAAGCTGGTCCATGGTTCCATAGCAATCTTGTCTGATGCAGGTCTGGGAATGGCCATGTTTAGCTTGGGGCTGTTCATGGCACTCCAGCCGAGAATCATAGCGTGTGGAAAATCTGTTGCTGGATTCGCAATGGCTGTTAGATTTCTTACTGGCCCTGCTGTAATGGCAGCTGCCTCTATTGCCGTTGGCCTGAGAGGTTCGTTGCTGCATGTGGCCATTGTTCAGGCAGCGCTTCCCCAAGGAATTGTTCCATTTGTTTTCGCGAAAGAGTACAACGTACATCCTGAAATACTAAGCACAGCAGTTATATTCGGGATGTTGATTGCATTGCCGATAACTTTGATCTACTATATCCTCCTTGGCCTTTAA___AGCACGACTCAAAGATTCAGAATTTCTGGACTGAAACAAAGTCCATAGGATTTCACAGCCCGGAATGCATATATACAATCTGTTTAAAAGCCTGGATCAGGGAGCGGATCTTGGCTTGGAGGGATCTAAATTCATTATCATGACTGTAACTCAAGAAATGACATGACATATTCTGGCTATAATAACAGCTGGGCTTTCTGTAACAGTTTCCAGTCTTTTTATAAATCTCGTTACATTGTTCAAGTTCGACCAAGGGCGCGCTAATTGTGCCAGTTTTGTGCGTAGAGATACAGCAACTGTAGCTTAATATTGTGAGTAAAAAGAGGTCTTGCAGCTTCCTTATTTCAGAGACAGATATTCGCCATTGTTGACCACTTGAAGGTTCCCACTCCTGTGAAATTGTTTAAATGTTATAACCAGAATCTTACATACTAATGAAAG

Fln Alignment:

Contig4213___AKELHMFVWSSSASPVSEGNQLHVFGGTHELGGAPPDNNAKSDPNGKEVRTV----DQHPVNGG--KGLHETSSGS--YDEYARGHFSPGKKAMVSHGEESITRDLEAASPNSKLAPGCSLDQYDEKSHVEARRMSMPPASVMTRLILIMVWRKLIRNPNTYSSALGLIWSFVSFRFNVTMPKLVHGSIAILSDAGLGMAMFSLGLFMALQPRIIACGKSVAGFAMAVRFLTGPAVMAAASIAVGLRGSLLHVAIVQAALPQGIVPFVFAKEYNVHPEILSTAVIFGM
B5TXD0______________AKELHMFVWSSSASPVSEGG-LHVFGGAEF---ADPGRTAATDHNAKEIRMLVSPTADHATNGGVAKGLPELRHDQQPYEEYAREDFSFGNRAM-SQGNESIPLDKEG--PSLSKFGSSSTAELHPKSHDEKHKQ-MPPASVMTRLILIMVWRKLIRNPNTYSSLIGLIWALVSFRWNVHMPRIVAHSIAILSDAGLGMAMFSLGLFMALQPRIIACGNSVAAFAMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGM

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
534		12		87	0.992554
545		12		87	0.992554
580		75	25		1.0
596	10		90		0.90298
602			90	10	0.90298
638	90		10		0.90298
697			63	36	1.0
712	63			36	1.0
881		20		80	0.995493
1225	42		57		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
9	22	CAA CAA CAA CAA CA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain