SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4204

Length: 2098 nt

UniGene Fasta

>sp_v3.0_unigene4204
ATTCTGCTATCTTCCGCTCAAGTCGCACACGCTTACTCAAAGCACCAACTCAACCAGGGTGTAATGGGCAATCTTCAGTTAGTTTTATTTTACCTGAGATTGCGAAGCTTTCAGAGGATGTAGTTACTGATAATCTTACAATTTTATTCGTTAGTTGTGTGGGCCCTAGGAATGTTTGCAATGGGAAGGATCTGCAATTATGCTCATTAGTGAACTACAGTGGGCAAGTTCTGTGGGGAAAATTGGATATGGGTTCACTTTGTAGTACCTGGGAGAGGTCTTTACCTTTGAAACTGGGGCACAGAGCTGATATGCGTTCTGCTGTGGAATTACACGGCAGCATCCTTGAGCATGCTTTTTTGGATAATGGAAGTCACCATCTGGTATTCAAGGCACCGAATAAGTTGACTAATTTGACCTCGGCAATGCGGTTACGAGTGGAAATCTCAGCCGAAGAGTTGGGACCAAGAGAGAAGTCCTCATATAATTCTTATTCCTTCAACGACATTCCTTCATCTTTGTTGTCCCGCATTATTCGATTGAGGGCTGGAAATGTGATTTTCAATTATAAGTATTATAACAATACATTGCAGAAGACAGAAGTTACTGAAGATTTCTCCTGCCCCTTTTGTTTGGTTCATTGCGCCAGTTTTACGGGGTTAAGAAGACATTTGACTTCTTGCCATGAGTTATTCAACTTTGAATTCTGGGTAACTGAAGAGTACCAGGCAGTAAATGTCTCTGTCAAGAATGAGATTTGGAGATCTGAGGGCAACATTTTGGACTCAGATGGCAATGAAGCTCGATTTAAAACATTCTGTTTCTGCTCAAGATTCAACCCATTGAAGAGACGCCAGACAGCTGTTCCTAATCGAACATACATTCACTGCCAAATTGAAAAGCTAAACTCACCAGAAACAGCCAGCTTATGCCGATCCCAAAATACTTTGACGAATTGTGTTGCAATGAACTCACTTGACACCTCTGTTGGACCTTTTTCAAATGGTATCTTTACATCAAAGGAGCCATCTTCACCAAGGATTTTTCATAATCGCTCACCTGGTGAATTAAATTCAGAGGTACAGAATTCCACAGAACAAGAACAAGCTAGCCTTATAGCACAGGCATTGCCTGCAAGAAAGGAACCACCTCAGCTTAGTCACGCAAGGATAATTTCTTTTGAGGAAGATAGAGAGAAAAAAAGTAATCTCTCCAATGGAGATATTGCATTGTCATCTGAAAGGCAAGAAACAGTGACCTCAGTTGTTGAGCATGGCTTTGGGGATTCTGTATCAAATGGTGTATGCTTGGCTTCAACGGTGACACCTGGAACTAGTGAATGTGGTCCTCAAACTGATGCAAGCAACCTGTCACCACCTCCCAGGCTGCAGTTTGGAAAAACAAGGAAATTATCTGTTGAGCGAGCTGAACCACGAAGCCGTATACTTCTCCAAAAGCGACAGTTTTTTCATTCACACAGAGCACAGCCAATGGCCTTGGCGCAAGTGTTATCAGATAGAGATAGCGAAGATGAAGTTGATGATGACATTGCAGACTTTGAAGACAGGAGGATGCTTGATGATTTTGTAGATGTGACAAAGCATGAGAAGAAGCTTATGCACCTTTGGAATTCTTTTGTTAGGAAGCAACATGTGCTAGCAGATGGTCACATATCTTGGGCATGTGAGGCATTTTCTAAGCATCATGGTCAGGATCTTGCTCGAATTGGAGCTCTCCAATGGTGCTGGAGGTTGTTTATGGTCAAACTTTGGAATCACAATCTTCTTGATGCAAGCACCATGAATCGCTGTAACATTATCTTGGAGAACTATACTAAGAATCAATAGGTTTCTCAGAATGATTTGTATGATGCTGTTTTCAAGGGCTTAATTTGGAATAGTAGAAATTGGGCTTGTTGCTTAATCAATTGCGGAATTGTATCAGTTGGTTAAGGTATGGGCAGTAACTCATTCTTTCTGATTTTGAATGATTTGTTGTAGAGTTATAGTGGAGTTGTAGTCTTATCATTCAACTATTCATTGATGTAACATTCTTTTGTTACTGGTCTAAAATGGAAATTAAATAGCATTTTTGTACC

Ace file of the UniGene sp_v3.0_unigene4204

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Embryonic flower 2 n=1 Tax=Yucca filamentosa RepID=Q1W6L0_YUCFI	-	-	0.0	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Sma3	Embryonic flower 2	-	-	1.009e-24	-

Source	Gene names
Sma3	AT4g16810; AT4g16850; At4g16810; At4g16845; At5g51230/At5g51240; At5g51240; EMF2; FCAALL.23; GSVIVT00004611001; GSVIVT00008025001; GSVIVT00008058001; GSVIVT00009965001; GSVIVT00012659001; GSVIVT00014221001; GSVIVT00014222001; HvEMF2b; HvEMF2c; MWD22.18/MW

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	regulation of gene expression by genetic imprinting	GO:0006349	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	negative regulation of flower development	GO:0009910	Biological Process	-
Sma3	vernalization response	GO:0010048	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002299409.1	hypothetical protein POPTRDRAFT_814985 [Populus trichocarpa]	0.0	46%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A7X6

Fln msg: your sequence is longer than subject: 533 - 118

Fln protein: MGSLCSTWERSLPLKLGHRADMRSAVELHGSILEHAFLDNGSHHLVFKAPNKLTNLTSAMRLRVEISAEELGPREKSSYNSYSFNDIPSSLLSRIIRLRAGNVIFNYKYYNNTLQKTEVTEDFSCPFCLVHCASFTGLRRHLTSCHELFNFEFWVTEEYQAVNVSVKNEIWRSEGNILDSDGNEARFKTFCFCSRFNPLKRRQTAVPNRTYIHCQIEKLNSPETASLCRSQNTLTNCVAMNSLDTSVGPFSNGIFTSKEPSSPRIFHNRSPGELNSEVQNSTEQEQASLIAQALPARKEPPQLSHARIISFEEDREKKSNLSNGDIALSSERQETVTSVVEHGFGDSVSNGVCLASTVTPGTSECGPQTDASNLSPPPRLQFGKTRKLSVERAEPRSRILLQKRQFFHSHRAQPMALAQVLSDRDSEDEVDDDIADFEDRRMLDDFVDVTKHEKKLMHLWNSFVRKQHVLADGHISWACEAFSKHHGQDLARIGALQWCWRLFMVKLWNHNLLDASTMNRCNIILENYTKNQ*

Protein Length: 534

Fln nts: ATTCTGCTATCTTCCGCTCAAGTCGCACACGCTTACTCAAAGCACCAACTCAACCAGGGTGTAATGGGCAATCTTCAGTTAGTTTTATTTTACCTGAGATTGCGAAGCTTTCAGAGGATGTAGTTACTGATAATCTTACAATTTTATTCGTTAGTTGTGTGGGCCCTAGGAATGTTTGCAATGGGAAGGATCTGCAATTATGCTCATTAGTGAACTACAGTGGGCAAGTTCTGTGGGGAAAATTGGAT_-_ATGGGTTCACTTTGTAGTACCTGGGAGAGGTCTTTACCTTTGAAACTGGGGCACAGAGCTGATATGCGTTCTGCTGTGGAATTACACGGCAGCATCCTTGAGCATGCTTTTTTGGATAATGGAAGTCACCATCTGGTATTCAAGGCACCGAATAAGTTGACTAATTTGACCTCGGCAATGCGGTTACGAGTGGAAATCTCAGCCGAAGAGTTGGGACCAAGAGAGAAGTCCTCATATAATTCTTATTCCTTCAACGACATTCCTTCATCTTTGTTGTCCCGCATTATTCGATTGAGGGCTGGAAATGTGATTTTCAATTATAAGTATTATAACAATACATTGCAGAAGACAGAAGTTACTGAAGATTTCTCCTGCCCCTTTTGTTTGGTTCATTGCGCCAGTTTTACGGGGTTAAGAAGACATTTGACTTCTTGCCATGAGTTATTCAACTTTGAATTCTGGGTAACTGAAGAGTACCAGGCAGTAAATGTCTCTGTCAAGAATGAGATTTGGAGATCTGAGGGCAACATTTTGGACTCAGATGGCAATGAAGCTCGATTTAAAACATTCTGTTTCTGCTCAAGATTCAACCCATTGAAGAGACGCCAGACAGCTGTTCCTAATCGAACATACATTCACTGCCAAATTGAAAAGCTAAACTCACCAGAAACAGCCAGCTTATGCCGATCCCAAAATACTTTGACGAATTGTGTTGCAATGAACTCACTTGACACCTCTGTTGGACCTTTTTCAAATGGTATCTTTACATCAAAGGAGCCATCTTCACCAAGGATTTTTCATAATCGCTCACCTGGTGAATTAAATTCAGAGGTACAGAATTCCACAGAACAAGAACAAGCTAGCCTTATAGCACAGGCATTGCCTGCAAGAAAGGAACCACCTCAGCTTAGTCACGCAAGGATAATTTCTTTTGAGGAAGATAGAGAGAAAAAAAGTAATCTCTCCAATGGAGATATTGCATTGTCATCTGAAAGGCAAGAAACAGTGACCTCAGTTGTTGAGCATGGCTTTGGGGATTCTGTATCAAATGGTGTATGCTTGGCTTCAACGGTGACACCTGGAACTAGTGAATGTGGTCCTCAAACTGATGCAAGCAACCTGTCACCACCTCCCAGGCTGCAGTTTGGAAAAACAAGGAAATTATCTGTTGAGCGAGCTGAACCACGAAGCCGTATACTTCTCCAAAAGCGACAGTTTTTTCATTCACACAGAGCACAGCCAATGGCCTTGGCGCAAGTGTTATCAGATAGAGATAGCGAAGATGAAGTTGATGATGACATTGCAGACTTTGAAGACAGGAGGATGCTTGATGATTTTGTAGATGTGACAAAGCATGAGAAGAAGCTTATGCACCTTTGGAATTCTTTTGTTAGGAAGCAACATGTGCTAGCAGATGGTCACATATCTTGGGCATGTGAGGCATTTTCTAAGCATCATGGTCAGGATCTTGCTCGAATTGGAGCTCTCCAATGGTGCTGGAGGTTGTTTATGGTCAAACTTTGGAATCACAATCTTCTTGATGCAAGCACCATGAATCGCTGTAACATTATCTTGGAGAACTATACTAAGAATCAATAG___GTTTCTCAGAATGATTTGTATGATGCTGTTTTCAAGGGCTTAATTTGGAATAGTAGAAATTGGGCTTGTTGCTTAATCAATTGCGGAATTGTATCAGTTGGTTAAGGTATGGGCAGTAACTCATTCTTTCTGATTTTGAATGATTTGTTGTAGAGTTATAGTGGAGTTGTAGTCTTATCATTCAACTATTCATTGATGTAACATTCTTTTGTTACTGGTCTAAAATGGAAATTAAATAGCATTTTTGTACC

Fln Alignment:

Contig4204___MALAQVLSXXXXXXXXXXXXXXXXXXXMLDDFVDVTKHEKKLMHLWNSFVRKQHVLADGHISWACEAFSKHHGQDLARIGALQWCWRLFMVKLWNHNLLDASTMNRCNIILENYTKNQ
D5A7X6______________MALEQVLSDRDSEDEVDDDIADFEDRRMLDDFVDVTTHEKQLMHLWNSFVRKQRVLADGHIPWACEAFSKLHGRNLSQRKALLWCWRLFMVKLWNHNLLDAATMNRCNLILENCNNNQ

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1011	50		50		1.0
1047			50	50	1.0
1359		12		87	0.992554
1526	90		10		0.90298
1527			10	90	0.90298
1730			10	90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain