SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4178

Length: 1463 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene4178

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Mitochondrial glycoprotein family protein [Arabidopsis thaliana] gb\|AAM91613.1\| putative protein [Arabidopsis thaliana] gb\|AAN15390.1\| putative protein [Arabidopsis thaliana] dbj\|BAH19625.1\| AT4G32605 [Arabidopsis thaliana] gb\|AEE86088.1\| Mitochondrial gl	-	-	8.99999e-40	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	GOs	Term	Type	e value	Identity
Sma3	mitochondrial matrix	GO:0005759	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Mitochondrial glycoprotein	IPR003428	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G32605.1	Mitochondrial glycoprotein family protein chr4:15726429-15727864 REVERSE LENGTH=227	46%
RefSeq	Arabidopsis thaliana	NP_001078481.1	Mitochondrial glycoprotein family protein [Arabidopsis thaliana]	46%
RefSeq	Populus trichocarpa	XP_002315413.1	predicted protein [Populus trichocarpa]	48%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQ71

Fln msg:

Fln protein: MPVRFRMKMAGSVSRTVLRAQRRLCASSFGVTTLIKNDEKWSFRWTQQARRAHSSSGSSVAIEKNLLAHLKEQYLEASRMRPPPKIGPPKPFIVIKGALDTDAPVLSRTFNNEEIKISVLRLSVFGPNGEVDDSDEENFNQLFLSVAILKGDEGPALQFICDLYPDAMGIQSVALKDRKDISKQTLIIPQGYEGPSFQDLDKKLQQAFRQYLEERGINESLFRFLQAWLYVKEHRNLMQWFKTVGTFITKQTVPDNS*

Protein Length: 259

Fln nts: TTGATCCCACTGCTTAAGCAGCGTCGTGACCTTGGCTGTCACTCGATTCCATTCTCAGATAGTTTTTGTTCGTTTAAACCTTTTCATACATCTGCAAGTTTTAGAACATTGCATCATCGTACCCCATTAATATGCCAATCTCACAGTC_-_ATGCCGGTTAGATTTCGCATGAAGATGGCGGGCAGTGTGAGCAGAACAGTGTTACGAGCGCAAAGAAGGCTATGCGCCTCCAGTTTTGGGGTTACCACGCTCATAAAAAATGATGAAAAATGGAGTTTTCGGTGGACACAGCAAGCACGCCGTGCTCATTCTTCAAGCGGGAGCTCTGTCGCCATTGAAAAAAACTTGTTGGCACACCTGAAGGAACAATACCTCGAAGCCTCCAGGATGCGCCCACCTCCAAAAATAGGCCCTCCAAAACCATTCATTGTTATTAAAGGTGCACTGGACACGGATGCCCCAGTTTTGTCAAGAACTTTTAACAATGAGGAGATTAAAATCTCAGTGTTGCGTTTATCTGTTTTTGGACCAAATGGTGAAGTGGATGACAGTGATGAAGAAAACTTTAACCAACTTTTTCTGAGCGTTGCTATTTTAAAGGGTGATGAAGGACCTGCTCTGCAGTTCATATGTGATCTTTATCCCGACGCAATGGGCATACAATCTGTAGCTCTCAAAGATAGAAAGGATATCTCAAAACAGACTTTGATCATTCCTCAGGGTTACGAGGGACCTAGTTTTCAGGATCTTGATAAGAAACTCCAGCAAGCATTCCGCCAATATTTGGAAGAGCGGGGCATCAACGAGAGCCTCTTTCGTTTTCTCCAAGCATGGCTTTATGTGAAAGAACACCGAAATCTAATGCAATGGTTTAAAACTGTTGGCACATTCATCACCAAACAAACAGTACCTGATAATAGTTGA___AGGAGCTTCGTAGGAAATGATTCATCATATAGGATAGTTTGCAACTTTGCACAGTTGTAACTGCTTCTCTACATCAATGAGTACAATTCTAGGCCCTGGTTGGAATTTTTTTGAAGAGCATGTAATGTGAGAATTGTGTGGGGTTATTTTACCAGGGGACTGAGCACTGCTGGTTCAGAAATCAGTGTGGCATATTAGTATAGTAAAATGTTTGTGCTGTCATTTAAGTCCTCTGGGACACATCAATATAACTCGTTGTCTCATTGCCTGATATTGCTGTAGATTCCGTATTACACCGTAGACAGTCTTCCTCCGATGCGCCTGCAAATTTGGTGATATTCCCATGGAAAGAGCCCTGGGTTAGATTTGGGGTTGATAATTTAGATAAAGAGATTTACATTTCAGTAATTATGGTCATTTAAGTTGCGTTCCTTTCTCAGTGCAGAAAGTAATAATGATTTACCTAATTGGAAATACAACCAAATTGCTTGAATCACTTTTAGATCTCTATCTTGGTTAGTTTCATCTGCTATGTAGCAAC

Fln Alignment:

Contig4178___MPVRFRMKMAGSVSRTVLRAQRRLCASSFGVTTLIKNDEKWSFRWTQQARRAHSSSGSSVAIEKNLLAHLKEQYLEASRMRXXXXXXXXXXXXXXXGALDTDAPVLSRTFNNEEIKISVLRLSVFGPNGEVDDSDEENFNQLFLSVAILKGDEGPALQFICDLYPDAMGIQSVALKDRKDISKQTLIIPQGYEGPSFQDLDKKLQQAFRQYLEERGINESLFRFLQAWLYVKEHRNLMQWFKTVGTFITKQTVPDNS
A9NQ71______________MTVRFGMKMAGSVGRTVLQGQRRLCASKFGVPKLIKNDEKCSFLGTQQACRAHSSSGSSASVEKSLLGHLKEQYLEASKIHPPPKIGPPKPFVVIKGALDTDGPVLSRTFNHEEIKVSVLRLAVFGQNGEVDDSDEENFSQLFLSVAILKGDEGPALQFICDLYPDAMGIQSVALKDRKDISKRTLILPEGYEGPSFQDLDKKLQLAFHRYLEERGINEGLFRFLQAWLYVKEHRSLMQWLKTVGTFITKQTVPDNS

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
158	16	83			0.994512
159		83		16	0.994512
162			16	83	0.994512
163			16	83	0.994512
304		11		88	0.923564
523	33			66	1.0
1040			12	87	0.992554
1041			87	12	0.992554
1056		12		87	0.992554
1216	12		87		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain