SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4167

Length: 1840 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene4167

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Metalloendopeptidase, putative n=1 Tax=Ricinus communis RepID=B9RBI4_RICCO	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase M48	IPR001915	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G27110.1	Peptidase family M48 family protein chr3:9998006-9999892 FORWARD LENGTH=344	77%
RefSeq	Arabidopsis thaliana	NP_850640.1	Peptidase family M48 family protein [Arabidopsis thaliana]	77%
RefSeq	Populus trichocarpa	XP_002300105.1	predicted protein [Populus trichocarpa]	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKZ9

Fln msg:

Fln protein: MWGSGNWSAPYPECTAIASSPRFHCQRAHLHNVPFSSSFPRNLNCCVFFLPYPHDDSMIKVRPKRKQGCRIAPQRQGKCRAAVSFPNLQADDFRHPLDRQNTALLRAVPGLNEFGKMLLGPVSEQVMLLENIGTSVRVTENQLSDLHQLMVEAANILRIEVPDLYVRQNPVPNAYTLAIGGRKPFVVVHTSIVELLTPKELQAVLGHELGHLKCDHGIWLTFANILALGAYSIPGLGAFIAQTFEEQLFRWVRAAELTCDRAALLVVQDPKVVISVLMKLAGGCPSLAGQLNVDAFLEQARSYDAASSSPLGWYLRNAQTRQLSHPLPVMRAREVDQWARSPQYKALLGRASAFLLKSKPPPS*

Protein Length: 365

Fln nts: ATTTATAACAAGTTTAATCAGAAAGACAAATTTGTTCTGAAGGTATAGTCCGGTTCCTGGTGCTGAAGGTATAGGCCGGTTCGACGAAC_-_ATGTGGGGGAGCGGGAATTGGAGCGCCCCTTACCCTGAATGTACTGCAATTGCAAGCAGCCCTCGGTTTCACTGCCAGAGAGCTCACCTGCACAATGTTCCATTTTCATCATCATTCCCCAGGAATCTTAATTGTTGCGTCTTCTTCCTCCCGTATCCGCATGATGATTCCATGATCAAGGTGCGGCCTAAGAGAAAGCAGGGTTGCAGAATAGCTCCGCAGAGGCAGGGGAAGTGTCGGGCAGCTGTCAGTTTTCCTAATCTTCAAGCGGATGACTTTAGGCATCCTCTTGATAGACAGAATACGGCACTTCTCAGAGCTGTTCCAGGCTTGAATGAATTTGGCAAGATGTTGTTGGGGCCTGTTTCAGAACAAGTTATGCTTCTGGAGAATATAGGAACGTCAGTGCGTGTGACTGAGAATCAGCTTTCTGATCTACATCAATTAATGGTTGAAGCAGCAAATATTCTGCGTATCGAGGTACCTGACCTCTATGTCCGTCAGAATCCTGTCCCTAATGCATATACCCTGGCAATAGGAGGGCGAAAGCCATTTGTTGTTGTGCATACTAGCATTGTGGAGCTTCTTACCCCTAAAGAATTGCAGGCAGTGCTAGGGCATGAATTGGGACATCTGAAGTGTGATCATGGCATCTGGCTCACTTTTGCAAACATACTTGCACTGGGTGCTTACTCCATTCCTGGGCTAGGGGCTTTTATTGCCCAGACATTTGAAGAGCAGTTATTTCGGTGGGTGCGAGCAGCAGAACTGACATGTGACAGGGCTGCTCTTCTTGTAGTGCAGGATCCAAAAGTGGTAATCTCGGTATTAATGAAATTGGCGGGAGGGTGTCCATCTTTAGCAGGGCAGCTGAATGTGGATGCATTTCTAGAACAAGCTCGCTCTTATGATGCTGCATCTTCAAGTCCTCTGGGATGGTATCTAAGAAATGCTCAGACGCGGCAACTGTCCCACCCATTGCCTGTTATGCGTGCCCGAGAAGTAGATCAGTGGGCCAGAAGCCCACAATACAAGGCTCTCTTGGGGCGTGCTTCTGCATTCCTCTTGAAATCCAAACCCCCTCCAAGTTGA___ACTTAGTGAACTGAGGATATTGGAAGTATTGTACGTTATAACAAAACAGTAGTTACATAGCCAGCCTTTGAAGAGGCCCTTTTCTACTATTTTCAATGACAGTAAGCAATACTCATATTATCAAGGGCTCTACTGTAATGTATGATATCAATAGTGGAAAAAGAAATTATCTGTTATCATCAACACGGAGGACATTTAAGCAGCCATTGCTACATAGCTTCCATACTGTGCTATATAAAATATTAGAGGCATATTAGCGTACGGGAGTGAAAATTGGAAGTTTATACCAGCCTGCATGATGTGCATAATGTAAATCATGATCATCTAACTGTTGGTTGTCATTTGTCATTTGAGAGTCTACTGCATACCTTTATTCATTTCGTTTCCTCCCTCGCAAAATATAAGTATTTGAGATTAACTTTGATTAAACAATTCAGCCAGTCACTGAAAAATGGTTGTTTGATTGGTGAATGTTTGTCTTATCAGTTTCGCAACAACTGAATTCAGCAATGTACAAAATTCTCCATTTCTTTCTTTCTTTCTTCTCATGATAAATTCCCTTAGTATGTTTGGCAAATTTGACACTGGTTATGGATAAACTGTAATATTTCGAACAACTAAATTCACCAATATAAAAATTTGCTCAAGGTTTACATCTC

Fln Alignment:

Contig4167___MWGSGNWSAPYPECTAIASSPRFHCQRAHLHNVPFSSSFPRNLNCCVFFLPYPHDDSMIKVRPKRKQGCRIAPQRQGKCRAAVSFPNLQADDFRHPLDRQNTALLRAVPGLNEFGKMLLGPVSEQVMLLENIGTSVRVTENQLSDLHQLMVEAANILRIEVPDLYVRQNPVPNAYTLAIGGRKPFVVVHTSIVELLTPKELQAVLGHELGHLKCDHGIWLTFANILALGAYSIPGLGAFIAQTFEEQLFRWVRAAELTCDRAALLVVQDPKVVISVLMKLAGGCPSLAGQLNVDAFLEQARSYDAASSSPLGWYLRNAQTRQLSHPLPVMRAREVDQWARSPQYKALLGRASAFLLKSKP
B8LKZ9______________MWGSGNWSAPHPECIGIASSPRSQCQRAHLHDVSFSSSYPRNRNCRVFSLPYPHNDSMMKVRPKRKQGCRKAPQRQWKCRAVVSFPNLQADDFRHPLDRQNTALLRAVPGLNEFGKILLGPVSEQVMLLENIGTSVHVTENQLSDLHQLMVEAANILCIEVPDLYVRQNPVPNAYTLAIGGRKPFVVVHTSIVELLTRRELQAVLAHELGHLKCDHGIWLTFANILTLGAYTIPGLGSFIAQTFEEQLFRWVRAAELTCDRAALLVVQDPKVVISVLMKLAGGCPSLAGQLNVDAFLEQARSYDAASSNPLGWYLRNAQTRQLSHPLPVLRAREVDQWARNPQYKALLKRASAFHSKSKP

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
537	10			90	0.90298
538	90	10			0.90298
541			90	10	0.90298
564	11		88		0.923564
967		12		87	0.999964
968	11		88		0.999952
970			88	11	0.999952
1264		12		87	0.992554
1313		88		11	0.923564
1444	90		10		0.90298
1445		90	10		0.90298
1446	20		80		0.999996
1579	78		21		1.0
1608		10		90	0.90298
1621		87		12	0.992554
1630	16		83		0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
1708	1725	TTTC TTTC TTTC TTTC TT	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain