SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4164

Length: 1460 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene4164

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NAC domain protein, IPR003441 n=1 Tax=Populus trichocarpa RepID=B9IJW7_POPTR	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	49%
Sma3	NAC domain protein, IPR003441	-	-	-

Source	Gene names
Sma3	ANAC; ANAC094; AT4g36160; ATAF; ATAF1; At1g01720; At1g26870; At1g52880; At1g52890; At1g69490; At1g77450; At1g77450/T5M16_4; At2g02450; At2g43000; At3g15500; At3g15510; At4g27410; At4g36160; At5g39820; At5g63790; AtNAC2; B1065E10.51; B1099D03.25; B1148D12.

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	negative regulation of abscisic acid mediated signaling pathway	GO:0009788	Biological Process	-
Sma3	multidimensional cell growth	GO:0009825	Biological Process	-
Sma3	jasmonic acid mediated signaling pathway	GO:0009867	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	leaf senescence	GO:0010150	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	positive regulation of asymmetric cell division	GO:0045770	Biological Process	-
Sma3	somatic stem cell division	GO:0048103	Biological Process	-
Sma3	root cap development	GO:0048829	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	No apical meristem (NAM) protein	IPR003441	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	Glycoside hydrolase, family 9, active site	IPR018221	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G26870.1	FEZ, ANAC009 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein chr1:9312856-9314983 FORWARD LENGTH=425	69%
RefSeq	Arabidopsis thaliana	NP_174009.1	no apical meristem-domain containing transcriptional regulator [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002323852.1	NAC domain protein, IPR003441 [Populus trichocarpa]	46%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NS66

Fln msg: your sequence is longer than subject: 404 - 324

Fln protein: MEQKDDIDQADEMMLPGFRFHPTDEELVGFYLRRKVQQRPLSIELIKQLDIYKYDPWDLPKMASIGEKEWYFYCPRDRKYRNSARPNRVTSAGFWKATGTDRPIYSSDGTKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRLPTAADSKGSLDKNLPPNDAWAICRIFKKNTISQRALSHAWAPPLAERRVESISSPMNSDMVSGNCMGAVNFSHDPEEQSNQTRNQTSTSSNLSNSQSSDHQTYNHDFQPKNVEISMEASYDTGLDGSDKVESSKSMPSFCGLKSMGLPNLELPNNYYSHVDPLSLKGTLDLVSCMLQMSPMAEFSVRPSSSDMTAAFSDPKTNYQNFSFFQPEATTDHHEDIFLKHNITNGHHLSPRSASSNNLLQFPPQLYDVLRSNVSWD*

Protein Length: 405

Fln nts: TCAGGTCATGTGCAGGTCTGAGAATACATGTTAAGGGATTTCAATAATATTTGACAGAGAGAGTGATCAGATATATAAATCGTTTGAGGGCAGGATTGTTTTGTGTCCAAA_-_ATGGAGCAGAAAGATGATATAGACCAAGCTGATGAGATGATGCTCCCAGGATTCAGATTTCATCCTACTGACGAGGAACTGGTTGGTTTCTATCTCCGAAGAAAAGTGCAACAGAGACCTCTATCAATTGAGCTCATCAAGCAACTAGATATCTACAAATATGATCCATGGGACCTTCCAAAAATGGCTTCCATCGGAGAGAAGGAATGGTATTTTTACTGCCCAAGGGACAGGAAGTACCGCAACAGTGCTCGACCCAACAGAGTAACATCTGCAGGTTTCTGGAAAGCCACTGGCACAGACCGACCAATTTACTCATCTGATGGCACCAAATGCATTGGCCTCAAAAAATCTCTTGTTTTCTACAAAGGGAGGGCAGCCAAAGGAATCAAAACCGACTGGATGATGCATGAATTTCGTCTTCCAACTGCAGCAGATTCTAAAGGCTCCCTAGACAAGAATCTGCCTCCTAATGATGCATGGGCTATTTGCAGAATTTTTAAAAAGAACACAATTTCACAGAGAGCTCTGTCTCATGCATGGGCACCTCCATTGGCTGAGAGAAGAGTGGAATCTATCAGCTCACCCATGAATTCAGACATGGTCTCGGGCAACTGCATGGGAGCTGTTAACTTCAGTCATGATCCCGAGGAACAGTCCAATCAAACTAGAAACCAGACTTCCACTTCTAGCAATCTCTCTAATTCCCAATCCAGTGATCATCAAACCTACAACCATGATTTCCAGCCAAAGAATGTGGAAATTTCCATGGAGGCTTCCTACGATACGGGCTTGGATGGATCAGACAAAGTAGAGTCTAGCAAATCAATGCCATCTTTCTGTGGTTTAAAATCAATGGGTCTGCCAAATCTGGAGTTACCCAACAACTACTATTCTCATGTGGATCCTTTATCTCTGAAGGGCACCCTTGATCTAGTAAGTTGCATGCTGCAGATGTCTCCTATGGCAGAGTTTTCTGTAAGACCATCAAGTTCAGATATGACAGCTGCTTTTAGCGATCCCAAGACAAATTACCAAAATTTCTCATTCTTCCAACCAGAAGCAACTACTGATCATCATGAAGATATATTTCTGAAACACAACATTACCAATGGCCACCACCTTAGTCCCAGATCAGCATCCAGTAATAATCTTTTGCAATTTCCACCTCAGTTGTATGATGTTTTGAGGAGTAATGTTTCATGGGATTAG___CCCACCTACACTGTGGAGCTTTATGCCACATTAAATTTTCAAATTAGATATGTGTTCTGATTAACCAGATAGACGTCGCGCATACCAACTATTGTGGATCACAGAGATAAACTCCATAAGATACCAGTCAGCAATAA

Fln Alignment:

Contig4164___VSKMEQKDDIDQADEMMLPGFRFHPTDEELVGFYLRRKVQQRPLSIELIKQLDIYKYDPWDLPKMASIGEKEWYFYCPRDRKYRNSARPNRVTSAGFWKATGTDRPIYSSDGTKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRLPTAADSKGSLDKNLPPNDAWAICRIFKKNTISQRAL
A9NS66______________IGRMGCKSGPNSAQINLPPGFRFYPTDEELMVHYLCKRVASQPFPIPIIAEIDLYKFDPWQLPEKALFGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGTDKPVTAGLNRMKVGVKKALVFYKGKAPRGIKTNWIMHEYRLADSA-SKAAKRKGSIRLDDWVLCRIYEKHYASQKAV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1147	28			71	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain