SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4140

Length: 2294 nt

UniGene Fasta

>sp_v3.0_unigene4140
GCAAACGAGGATTACCCACTTTATTAAGTCGGAGATTCCATTTTGCTATAATTTTGCTTTACTTCTCAGTCTCCTCGCTGAATTCCGACGACTTTTTCCTTGCTGCCGCAGTGGGGATCTTTCTTCTTCACTCAATGAGGATTCTCCTGCAGGGCTCAGAATGATGTCAAGGGCCGAGGTGTTTGCAGGGGGGCAGTCCAAGAAGGAGAAGGATGATAAGGAAGAGGCAGTGAGGAGGCTGAGGAATGCGGAGGCGAGCCTGAGAGATGCCATCGAGGAGGTGCAGAAGAAGCACAGACATCACGAGGGGCAGGGCCCTCCCTGTAATCATCCGGACTCCTGCGTGGCCAATGCGATTGGGAATCTGTGCCAGAGCTTTCTCTTGGCGTATGGAGTTAGGGTGGGAATTGGGATCCTTCTGAGGGCATTCAATCTTGCCAAAGGGCAGTCGTATCGCTCCATCCTCGACTTGAAGCTGCTTGTCTCAGAGAAAGATTTGATTGTAAGAGAAGAAGCTTGTCGGATTGGGTTGCTATTTGGTGGCTTTACTGGATCTTACCATGCTATTCGTTGTTTGTTGCGAAAAACAAGGAGAAAAGAGACACCTTTGAATGGATTTTTGGCAGGATCAGTGGCAGGATTATCAGTGTTAGCTTTAGATGATCCTTCCAGGAGGCGTACCCTAGCTTTATATCTTCTTACCAGACTTGCACAGTGTACCTACAACTCGGCCAAGTCCAAAAACAAATTTCATCTTTGGGGCAGCTCTTGGAGCCATGGAGATTCTTTGTTATTTGCCATAGCATCTGCACAGGTTATGTATTCATTTGTTATGCGGCCAGAAACACTACCCAAGTCATATCAAGATTTTATTGCAAAAACTGGCCCAGTTGCAAAGCCTGTTTATAAAGCAGTTAGAGAGAGTTGTAGAGGAGGTCCAGTTGATCTGGTCTCTCTCTCTGCTTATTTGTCAAGCAGAAAGGGTTCCCCGTCTCTTAAATTGGATCCATCTGCTTCAATTATTCCATGTTCTGTTATACATCCGGATTCAACCTCATGTTTAGCACATAATGGCAATGCAATGTATTCAACGTTCAGGAAGACATTTCCATTATATTTCTCATTGACGTTTGTGCCATATGTTGTCCTTCATCTTCAAAAGTTTATGGAGTCTCCCATGCGGACATGTTGGAATGCTATTAATGGGGCTGTGCGCTCTACATCATTCCTGTCGGCCTTTGTAGGAATATTTCAGGGAGTTATATGCTTGCAAAGAAAGGTTTCAACAAGGGACCATAAGCTTGTGTATTGGTTTGCTGGAGGCATGGCTGCTTTGTCTGTTTTGCTAGAGAAGAAGAGCAGACGAGACGAATTAGCTCTTTATGTGCTTCCTCGAGCTGCAGATTCATTGTGGTATATTTTAGTGAACAGACATCTACTTCCAGATATAAGAAATGCTGAAGTGGCACTTTTCTGCCTATGCACGGGAGGAATAATGTATTATTTGGAGTATGAACCAGATACAATGGCCCCCTTTCTAAGAGGGCTGATAAAGCGTTTTCTTGCTTGCCGAATAAGTACAGCTGACCAGCCTCCCAACCTTGGGGCTTCATATTCCTATGTCAACACCTTGAACTCTGGACATACTGCAAATTCAGAAGATAAACATGCCAGAAACTCGCGGAACACATCAATGACAAGAGAAGAGTTGAATCTGGAAGCCTTTTCTGGACTCTGACCACAATTTTGACAAGGGAATCTCTTTTATTCAAGTGGAGTGCTATGATATGTTTTAGCTTTGCCCTTGGCATAGTTAAATTCATTTTTTTTCTTCTTAAAATTCATTCTCAACATTTTCTATTTTTCACCAGTGACTTGGAGTAGGCACTGATTGTTTTGCTTGCCATTCCCAGTCGCATATTTTACAGTTTCCATAGGAATAGTTCAGTTAACTCATCAATCGAAAAAACACAATTGCTTGGGTTCTTTAACCATGTAAGTTTGATGTTTTTTGCTGAGGATTTGAGCTGGCAAAAGTTATAAATTTGTATTGTCATGCCAAACAAGAGCATTCAGTGCTAGGTAAGCATGGATACATCTTCACGGTTGTTGTCAAAGACACGATAAGGAACCATATCTTGTCTTCTGTTAATGGTTTGTCATCTTGAAGTGTATGATATATCCTTCTGGGAGGCACTTTGTCCCAAGGGCATTGCATATAAAAGGATCACTCTGCCCTTATCACTGGCACAATGAATAAAGTTTCTGGGATGTACATTGATTTGATCTTTTTA

Ace file of the UniGene sp_v3.0_unigene4140

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein [Arabidopsis thaliana] dbj\|BAA97377.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAK76512.1\| unknown protein [Arabidopsis thaliana] gb\|AAM14313.1\| unknown pro	-	-	0.0	69%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	74%

Source	Gene names
Sma3	At5g51150; GSVIVT00014093001; MICPUCDRAFT_15269; MICPUN_58285; OJ1058_B11.118; Os07g0494900; OsI_26076; OsJ_24320; PHYPADRAFT_137722; PHYPADRAFT_22122; POPTRDRAFT_575511; POPTRDRAFT_588174; RCOM_1502640; VITISV_030401;

Source	GOs	Term	Type	Identity
Sma3	mitochondrial inner membrane	GO:0005743	Cellular Component	-
Sma3	protein transporter activity	GO:0008565	Molecular Function	-
Sma3	protein transport	GO:0015031	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	0.0	-
Sma3	Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24	IPR003397	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G51150.1	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein chr5:20789034-20791495 FORWARD LENGTH=531	71%
RefSeq	Arabidopsis thaliana	NP_199928.1	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002321783.1	predicted protein [Populus trichocarpa]	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9RA10

Fln msg:

Fln protein: MMSRAEVFAGGQSKKEKDDKEEAVRRLRNAEASLRDAIEEVQKKHRHHEGQGPPCNHPDSCVANAIGNLCQSFLLAYGVRVGIGILLRAFNLAKGQSYRSILDLKLLVSEKDLIVREEACRIGLLFGGFTGSYHAIRCLLRKTRRKETPLNGFLAGSVAGLSVLALDDPSRRRTLALYLLTRLAQCTYNSAKSKNKFHLWGSSWSHGDSLLFAIASAQVMYSFVMRPETLPKSYQDFIAKTGPVAKPVYKAVRESCRGGPVDLVSLSAYLSSRKGSPSLKLDPSASIIPCSVIHPDSTSCLAHNGNAMYSTFRKTFPLYFSLTFVPYVVLHLQKFMESPMRTCWNAINGAVRSTSFLSAFVGIFQGVICLQRKVSTRDHKLVYWFAGGMAALSVLLEKKSRRDELALYVLPRAADSLWYILVNRHLLPDIRNAEVALFCLCTGGIMYYLEYEPDTMAPFLRGLIKRFLACRISTADQPPNLGASYSYVNTLNSGHTANSEDKHARNSRNTSMTREELNLEAFSGL*

Protein Length: 527

Fln nts: GCAAACGAGGATTACCCACTTTATTAAGTCGGAGATTCCATTTTGCTATAATTTTGCTTTACTTCTCAGTCTCCTCGCTGAATTCCGACGACTTTTTCCTTGCTGCCGCAGTGGGGATCTTTCTTCTTCACTCAATGAGGATTCTCCTGCAGGGCTCAGA_-_ATGATGTCAAGGGCCGAGGTGTTTGCAGGGGGGCAGTCCAAGAAGGAGAAGGATGATAAGGAAGAGGCAGTGAGGAGGCTGAGGAATGCGGAGGCGAGCCTGAGAGATGCCATCGAGGAGGTGCAGAAGAAGCACAGACATCACGAGGGGCAGGGCCCTCCCTGTAATCATCCGGACTCCTGCGTGGCCAATGCGATTGGGAATCTGTGCCAGAGCTTTCTCTTGGCGTATGGAGTTAGGGTGGGAATTGGGATCCTTCTGAGGGCATTCAATCTTGCCAAAGGGCAGTCGTATCGCTCCATCCTCGACTTGAAGCTGCTTGTCTCAGAGAAAGATTTGATTGTAAGAGAAGAAGCTTGTCGGATTGGGTTGCTATTTGGTGGCTTTACTGGATCTTACCATGCTATTCGTTGTTTGTTGCGAAAAACAAGGAGAAAAGAGACACCTTTGAATGGATTTTTGGCAGGATCAGTGGCAGGATTATCAGTGTTAGCTTTAGATGATCCTTCCAGGAGGCGTACCCTAGCTTTATATCTTCTTACCAGACTTGCACAGTGTACCTACAACTCGGCCAAGTCCAAAAACAAATTTCATCTTTGGGGCAGCTCTTGGAGCCATGGAGATTCTTTGTTATTTGCCATAGCATCTGCACAGGTTATGTATTCATTTGTTATGCGGCCAGAAACACTACCCAAGTCATATCAAGATTTTATTGCAAAAACTGGCCCAGTTGCAAAGCCTGTTTATAAAGCAGTTAGAGAGAGTTGTAGAGGAGGTCCAGTTGATCTGGTCTCTCTCTCTGCTTATTTGTCAAGCAGAAAGGGTTCCCCGTCTCTTAAATTGGATCCATCTGCTTCAATTATTCCATGTTCTGTTATACATCCGGATTCAACCTCATGTTTAGCACATAATGGCAATGCAATGTATTCAACGTTCAGGAAGACATTTCCATTATATTTCTCATTGACGTTTGTGCCATATGTTGTCCTTCATCTTCAAAAGTTTATGGAGTCTCCCATGCGGACATGTTGGAATGCTATTAATGGGGCTGTGCGCTCTACATCATTCCTGTCGGCCTTTGTAGGAATATTTCAGGGAGTTATATGCTTGCAAAGAAAGGTTTCAACAAGGGACCATAAGCTTGTGTATTGGTTTGCTGGAGGCATGGCTGCTTTGTCTGTTTTGCTAGAGAAGAAGAGCAGACGAGACGAATTAGCTCTTTATGTGCTTCCTCGAGCTGCAGATTCATTGTGGTATATTTTAGTGAACAGACATCTACTTCCAGATATAAGAAATGCTGAAGTGGCACTTTTCTGCCTATGCACGGGAGGAATAATGTATTATTTGGAGTATGAACCAGATACAATGGCCCCCTTTCTAAGAGGGCTGATAAAGCGTTTTCTTGCTTGCCGAATAAGTACAGCTGACCAGCCTCCCAACCTTGGGGCTTCATATTCCTATGTCAACACCTTGAACTCTGGACATACTGCAAATTCAGAAGATAAACATGCCAGAAACTCGCGGAACACATCAATGACAAGAGAAGAGTTGAATCTGGAAGCCTTTTCTGGACTCTGA___CCACAATTTTGACAAGGGAATCTCTTTTATTCAAGTGGAGTGCTATGATATGTTTTAGCTTTGCCCTTGGCATAGTTAAATTCATTTTTTTTCTTCTTAAAATTCATTCTCAACATTTTCTATTTTTCACCAGTGACTTGGAGTAGGCACTGATTGTTTTGCTTGCCATTCCCAGTCGCATATTTTACAGTTTCCATAGGAATAGTTCAGTTAACTCATCAATCGAAAAAACACAATTGCTTGGGTTCTTTAACCATGTAAGTTTGATGTTTTTTGCTGAGGATTTGAGCTGGCAAAAGTTATAAATTTGTATTGTCATGCCAAACAAGAGCATTCAGTGCTAGGTAAGCATGGATACATCTTCACGGTTGTTGTCAAAGACACGATAAGGAACCATATCTTGTCTTCTGTTAATGGTTTGTCATCTTGAAGTGTATGATATATCCTTCTGGGAGGCACTTTGTCCCAAGGGCATTGCATATAAAAGGATCACTCTGCCCTTATCACTGGCACAATGAATAAAGTTTCTGGGATGTACATTGATTTGATCTTTTTA

Fln Alignment:

Contig4140___DKEEAVRRLRNAEASLRDAIEEVQKKHRH--HEGQGPPCNHP--DSCVANAIGNLCQSFLLAYGVRVGIGILLRAFNLAKGQSYRSILDLKLLVSEKDLIVREEACRIGLLFGGFTGSYHAIRCLLRKTRRKETPLNGFLAGSVAGLSVLALDDPSXXXXXXXXXXXXXXQCTYNSAKSKNKFHLWGSSWSHGDSLLFAIASAQVMYSFVMRPETLPKSYQDFIAKTGPVAKPVYKAVRESCRGGPVDLVSLSAYLSSRKGSPSLKLDPSASIIPCSVIHPDSTSCLAHNGNAMYSTFRKTFPLYFSLTFVPYVVLHLQKFMESPMRTCWNAINGAVRSTSFLSAFVGIFQGVICLQRKVSTRDHKLVYWFAGGMAALSVLLEKKSRRDELALYVLPRAADSLWYILVNRHLLPDIRNAEVALFCLCTGGIMYYLEYEPDTMAPFLRGLIKRFLACRISTADQPPNLGASYSYVNTLNSGHTANSEDKHARNSRNTSMTREELNLEAFSGL
B9RA10______________DNSEAERRLRDAEERLREAIEELQRRQRRAARGGHYPPCDHPADESCVAHAIGNLCQSFLLSYGVRVGVGILLRAFKLAKGQSYSSLLDLKQLVSEKDLIVREEACRVGLLFGGFTGSYHAIRCLLRKLRRKETPFNAFLAGSVAGLSVLALDDSNRRRTLALYLLARVAQCAYNSAKSKNKFHLWGSHWRHGDALLFAFACAQVMYSFVMRPESLPKAYHDFIQKTGPVAQPVYKAVRDSCRGAPVDVASLSAYLCSRRKLNSVKLEKFPSIIPCSVIHPDTDSCLTHNANAASATFRKTFPLYFSLTFVPYVVLHLQRFMESPAHTCWLAVRDAVRSTTFLSAFVGIFQGVICLHRKVATVDHKLVYWIAGGISALSVLLEKKSRRAELALYVLPRAGDSLWYISVNRHLLPNIKNAEVALFCMCIGGIMYYLEHEPDTMAPFLRGLIRRFLASRISNPNPPSNRTASYTYLQALD----AMKPPKLQESREAEASSSQKYNLESIPGL

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
1342		33		66	1.0
1362	14		71	14	0.984337
1363	85			14	0.993533
1364		83		16	0.994512
1454	85	14			0.993533
1457			85	14	0.993533
1463	16		83		0.994512
1464		16		83	0.994512
1543	88			11	0.923564
1544		11	77	11	0.968132
1545			88	11	0.923564
1546		11	88		0.923564
1547	11	88			0.923564
1552	88	11			0.923564
1554	88	11			0.923564
1555			88	11	0.923564
1557	11		88		0.923564
1760	40	60			1.0
1802	33		66		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain