SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4137

Length: 1463 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene4137 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cleavage/polyadenylation specificity factor [Arabidopsis thaliana] dbj\|BAC42701.1\| unknown protein [Arabidopsis thaliana] gb\|AAO63939.1\| unknown protein [Arabidopsis thaliana] dbj\|BAF00402.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE85076.1\| clea	-	-	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Sma3	Chromosome chr15 scaffold_40, whole genome shotgun sequence	-	-	-

Source	Gene names
Sma3	GSVIVT00026791001;

Source	InterPros	Term	Type	e value	Identity
Sma3	Cleavage/polyadenylation specificity factor, 25kDa subunit	IPR016706	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G25550.1	Cleavage/polyadenylation specificity factor, 25kDa subunit chr4:13048519-13050873 FORWARD LENGTH=200	85%
RefSeq	Arabidopsis thaliana	NP_194285.2	cleavage/polyadenylation specificity factor [Arabidopsis thaliana]	85%
RefSeq	Populus trichocarpa	XP_002321911.1	predicted protein [Populus trichocarpa]	94%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKW4

Fln msg:

Fln protein: MLSGPVVNAYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLSSKLAANSSTLQPDWQIGECVAVWWRPNFETLMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFTFNMVNA*

Protein Length: 202

Fln nts: ATGGGGATATAATACCATAACGATTTGAACATGGGGCATGTGCCTTAGGTAAATCCCACGTCGATTCAACTTCTTTTCATTTTACACCGATTGTGTTACGGCCCAAAAGGAACATGAAAAGATTTGAATGTAGGTTTCGTTGGCGGTTTTCCTGAAGTTTCCGGAGAGAGCTGCTATTCCATTCGCAGTCGTAAATAGCCCATAGAAGGAAGAAATAAGAAAGCTCGCTGCTGCTGAATTCTTGATCTCTGACGCATAATACATCGGCAAGAGAAG_-_ATGTTGTCGGGACCGGTTGTAAATGCCTACCCTCTGTCAAGCTACACATTTGGGACCAAAGAGCCCAAGATGGAGAAAGACACCTCTGTTGCAGACAGGCTTGCAAGAATGAAAGTCAATTATATGAAAGAAGGCATGCGGACAAGTGTGGAAGCTATCCTCCTGGTACAGGAGCACAACCATCCCCATATACTGTTATTGCAAATTGGAAACACCTTTTGTAAGTTGCCTGGAGGACGCTTAAAGCCTGGTGAAAATGAAATTGAAGGCTTGAAGCGCAAACTGTCAAGCAAACTTGCTGCAAATTCAAGTACTCTTCAACCAGACTGGCAGATTGGAGAGTGTGTTGCTGTATGGTGGAGACCTAATTTTGAGACATTGATGTATCCTTATTGTCCACCCCACATTACAAAACCAAAGGAATGCAAGAAGCTTTTTCTTGTTCATCTATCCGAGAGAGAATATTTTGCAGTCCCCAAAAATCTGAAACTGCTTGCTGTTCCACTGTTTGAGCTCTACGATAATGTGCAGAGATACGGTCCGGTTATCTCAACTATTCCACAGCAGCTGTCAAGGTTCACTTTTAACATGGTTAATGCATGA___ACTTCATTGAGGGCCGGTTCTGTCAATAAATTATTGAGGACCTGCTTTCTTCAGGAAAAACATACTTTGTAATATGGTTGAATTATCAAGGGTCCATAAAATTTGGCACATCAATAGAGCCGGGACCTTTGCAATTGTTTGGGAACATAAGGTTTGGCCTGCGTGTTATTTATAACTTATGGTGTTTATCGTTTAGAGATACAAACTATTTCCTTATTGAATTGTGACGTGTATGCTTGCTACCTACAGTTGTCTTGTAAAAATTAGGTTGGAAAGACATACTTACTAAGCTTAGGGAACAAATAAACTATAAATACATCATTCTGTTGGCCATCAGCATTGTTAATTTTTGGACCGTGTTCTGCTTATTCAATGTTATGAAGCTCATTTTTGTTATTGATTATGGCTCTTACTGGAGAGATTGCTAGTGGAGCAATGTTTAAACATTTTAACTACAGTATAAATGTGAGCACATTATTTGTCACAAGTGGAGAAATGTACTGGTATTTTTCTATTGGCTACCTTTCCAATGCTTTTGTGGCTCTTGCCATAAATTTTCATCATATACTAGGAACAGGGGAAAT

Fln Alignment:

Contig4137___MEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLSSKLAANSSTLQPDWQIGECVAVWWRPNFETLMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFTFNMVNA
A9NKW4______________MEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEVEGLKRKLSSKLAANSTTLQPDWQIGECVAVWWRPNFETLMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFTFNMVNA

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
1333	50		45	5	1.0
1356		18		81	0.999994
1357		18		81	0.999994
1358		18		81	0.999994
1381	87	12			0.992554
1382	87	12			0.992554
1383	87	12			0.992554
1408		20	80		0.995493
1409		20	80		0.995493
1430	33	66			0.997452
1431	33	66			0.997452
1432		66	33		0.997452
1433	66		33		0.997452
1434			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain